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Lj0g3v0214359.1

Overview

Field Value
Gene ID Lj0g3v0214359
Transcript ID Lj0g3v0214359.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: DNA polymerase alpha catalytic subunit-like [Cicer arietinum] gi|502160825|ref|XP_004511916.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10322
1 292 292 2.10E-217 –
PANTHER
PTHR10322:SF21
1 292 292 2.10E-217
IPR029702
TIGRFAM
TIGR00592
1 445 445 3.20E-114 –
SUPERFAMILY
SSF53098
1 42 42 1.19E-48
IPR012337
SMART
SM00486
2 446 445 4.10E-72
IPR006172
CDD
cd05776
2 253 252 2.94E-87 –
Gene3D
G3DSA:3.30.420.10
2 44 43 2.90E-40
IPR012337
Pfam
PF03104
14 196 183 4.10E-16
IPR006133
Gene3D
G3DSA:3.30.420.10
83 267 185 2.90E-40
IPR012337
SUPERFAMILY
SSF53098
83 290 208 1.19E-48
IPR012337
Pfam
PF00136
255 445 191 2.80E-43
IPR006134
SUPERFAMILY
SSF56672
271 292 22 1.45E-35 –
Gene3D
G3DSA:3.90.1600.10
331 381 51 1.00E-07
IPR023211
SUPERFAMILY
SSF56672
332 445 114 1.45E-35 –
PANTHER
PTHR10322
333 445 113 2.10E-217 –
PANTHER
PTHR10322:SF21
333 445 113 2.10E-217
IPR029702
Gene3D
G3DSA:1.10.287.690
402 445 44 2.90E-11 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000166
Molecular function Nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
Subterm of
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003887
Molecular function DNA-directed DNA polymerase activity Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and a 3'hydroxyl group.
Subterm of

Genome browser

LORE1 insertions 15

Expression data

Expression pattern

Expression pattern of Lj0g3v0214359.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0214359.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.