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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • SSF56672
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 779 results. Now displaying 1 of 16 with 50 rows per page. This search has taken 0.960s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0038509.1
n.a. PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like [Cicer arietinum] gi|502154632|ref|XP_004509767.1| chr0 12502182 12522719 +
1 domain prediction
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Lj0g3v0038519.1
n.a. DNA-directed RNA polymerase isoform 1 [Theobroma cacao] gi|508709656|gb|EOY01553.1| chr0 12523933 12525903 +
1 domain prediction
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Lj0g3v0067139.1
n.a. PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Glycine max] gi|356514404|ref|XP_003525896.1| chr0 23763774 23766418 -
1 domain prediction
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Lj0g3v0104419.1
n.a. DNA polymerase [Medicago truncatula] gi|357459413|ref|XP_003599987.1| chr0 44674450 44680962 +
1 domain prediction
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Lj0g3v0104419.2
n.a. DNA polymerase [Medicago truncatula] gi|357459417|ref|XP_003599989.1| chr0 44675520 44678244 +
1 domain prediction
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Lj0g3v0122989.1
n.a. PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Glycine max] gi|356514404|ref|XP_003525896.1| chr0 55063165 55077351 +
1 domain prediction
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Lj0g3v0152049.1
n.a. LINE-type retrotransposon LIb DNA, Insertion at the S11 site-like protein [Theobroma cacao] gi|508700971|gb|EOX92867.1| chr0 70888065 70890110 +
1 domain prediction
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Lj0g3v0178229.1
n.a. GagPol3 [Arabidopsis lyrata subsp]. lyrata] gi|158828181|gb|ABW81060.1| chr0 86385716 86386040 -
1 domain prediction
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Lj0g3v0199559.2
n.a. PREDICTED: dynamin-2B-like [Glycine max] gi|356522123|ref|XP_003529699.1| chr0 97966111 97995708 -
1 domain prediction
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Lj0g3v0201619.1
n.a. PREDICTED: DNA polymerase alpha catalytic subunit-like [Vitis vinifera] gi|359480801|ref|XP_002277947.2| chr0 99712180 99713591 -
1 domain prediction
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Lj0g3v0214359.1
n.a. PREDICTED: DNA polymerase alpha catalytic subunit-like [Cicer arietinum] gi|502160825|ref|XP_004511916.1| chr0 108587115 108592406 +
1 domain prediction
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Lj0g3v0245739.1
n.a. PREDICTED: DNA polymerase I-like [Glycine max] gi|356500355|ref|XP_003518998.1| chr0 127419365 127421922 -
1 domain prediction
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Lj0g3v0280159.1
n.a. polyprotein [Glycine max] gi|27764548|gb|AAO23078.1| chr0 145288732 145291974 +
1 domain prediction
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Lj0g3v0299629.1
n.a. RNA-directed DNA polymerase [Pseudoalteromonas agarivorans] gi|490727264|ref|WP_004589692.1| chr0 155661928 155663127 +
1 domain prediction
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Lj0g3v0301649.1
n.a. n.a. chr0 156817170 156822329 +
1 domain prediction
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Lj0g3v0323479.1
n.a. Intron maturase isoform 4 [Theobroma cacao] gi|508776847|gb|EOY24103.1| chr0 168906099 168908427 +
1 domain prediction
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Lj0g3v0326609.1
n.a. DNA polymerase [Medicago truncatula] gi|357494395|ref|XP_003617486.1| chr0 170715411 170716487 +
1 domain prediction
 –
Lj0g3v0350249.1
n.a. PREDICTED: DNA polymerase theta-like [Cicer arietinum] gi|502124469|ref|XP_004498542.1| chr0 184001670 184012120 -
1 domain prediction
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Lj0g3v0351489.1
n.a. reverse transcriptase [Eleocharis acicularis] gi|294864135|gb|ADF45968.1| chr0 184813721 184814006 -
1 domain prediction
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Lj0g3v0357099.1
n.a. polyprotein [Glycine max] gi|27764548|gb|AAO23078.1| chr0 188031667 188032783 +
1 domain prediction
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Lj0g3v0359589.1
n.a. PREDICTED: DNA repair protein REV1-like isoform X2 [Cicer arietinum] gi|502158837|ref|XP_004511297.1| chr0 189299157 189307621 +
1 domain prediction
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Lj1g3v0049850.1
n.a. PREDICTED: DNA repair protein REV1-like isoform X2 [Cicer arietinum] gi|502158837|ref|XP_004511297.1| chr1 244558 260965 +
1 domain prediction
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Lj1g3v0052100.1
n.a. PREDICTED: DNA polymerase kappa-like [Cicer arietinum] gi|502158892|ref|XP_004511315.1| chr1 323868 325081 -
1 domain prediction
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Lj1g3v1077840.1
n.a. PREDICTED: DNA polymerase zeta catalytic subunit-like [Cicer arietinum] gi|502114426|ref|XP_004494955.1| chr1 13255743 13268286 -
1 domain prediction
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Lj1g3v1353700.1
n.a. PREDICTED: DNA polymerase delta catalytic subunit-like [Cicer arietinum] gi|502137074|ref|XP_004502958.1| chr1 16116848 16122510 -
1 domain prediction
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Lj1g3v1353710.1
n.a. PREDICTED: DNA polymerase delta catalytic subunit-like [Cicer arietinum] gi|502137074|ref|XP_004502958.1| chr1 16122652 16130922 -
1 domain prediction
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Lj1g3v3089430.1
n.a. PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial-like isoform X2 [Cicer arietinum] gi|502102072|ref|XP_004491958.1| chr1 35072292 35081039 +
1 domain prediction
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Lj1g3v4919850.1
n.a. OSJNBa0061G20.16 [Oryza sativa Japonica Group] gi|38346596|emb|CAE04660.2| chr1 59745060 59745696 +
1 domain prediction
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Lj2g3v1203430.1
n.a. PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like [Cicer arietinum] gi|502154632|ref|XP_004509767.1| chr2 19336237 19347538 -
1 domain prediction
 –
Lj2g3v1203430.2
n.a. PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like [Cicer arietinum] gi|502154632|ref|XP_004509767.1| chr2 19340340 19347538 -
1 domain prediction
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Lj2g3v1880870.1
n.a. PREDICTED: DNA polymerase alpha catalytic subunit-like [Cicer arietinum] gi|502160825|ref|XP_004511916.1| chr2 28064066 28077182 +
1 domain prediction
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Lj2g3v3138170.1
n.a. DNA polymerase [Medicago truncatula] gi|357494395|ref|XP_003617486.1| chr2 40544139 40547309 +
1 domain prediction
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Lj3g3v0839410.1
n.a. PREDICTED: telomerase reverse transcriptase-like [Glycine max] gi|356555309|ref|XP_003545976.1| chr3 10618588 10631005 -
1 domain prediction
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Lj3g3v0839410.2
n.a. telomerase reverse transcriptase [Populus trichocarpa] gi|198075764|gb|ACH81294.1| chr3 10618588 10631005 -
1 domain prediction
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Lj3g3v0930320.1
n.a. DNA polymerase [Medicago truncatula] gi|357482859|ref|XP_003611716.1| chr3 11000956 11003599 -
1 domain prediction
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Lj3g3v2995970.1
n.a. PREDICTED: DNA polymerase epsilon catalytic subunit A-like [Cicer arietinum] gi|502145356|ref|XP_004505995.1| chr3 37340713 37366917 -
1 domain prediction
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Lj3g3v2995970.2
n.a. PREDICTED: DNA polymerase epsilon catalytic subunit A-like [Cicer arietinum] gi|502145356|ref|XP_004505995.1| chr3 37344535 37366917 -
1 domain prediction
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Lj4g3v0451050.1
n.a. PREDICTED: DNA polymerase eta-like isoform X3 [Cicer arietinum] gi|502141797|ref|XP_004504643.1| chr4 6567550 6573184 +
1 domain prediction
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Lj4g3v0451050.2
n.a. PREDICTED: DNA polymerase eta-like isoform X3 [Cicer arietinum] gi|502141797|ref|XP_004504643.1| chr4 6567550 6572201 +
1 domain prediction
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Lj4g3v0451050.3
n.a. PREDICTED: DNA polymerase eta-like isoform X3 [Cicer arietinum] gi|502141797|ref|XP_004504643.1| chr4 6567550 6572885 +
1 domain prediction
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Lj4g3v1412070.1
n.a. T32E20.30 [Arabidopsis thaliana] gi|8778789|gb|AAF79797.1|AC020646_20 chr4 22116617 22116934 -
1 domain prediction
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Lj6g3v1934110.1
n.a. Intron maturase, type II family protein [Theobroma cacao] gi|508717617|gb|EOY09514.1| chr6 22050460 22054103 +
1 domain prediction
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Lj6g3v2275220.1
n.a. gag-pol polyprotein [Glycine max] gi|29423282|gb|AAO73529.1| chr6 26800969 26802177 +
1 domain prediction
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LotjaGi0g1v0001300_LC.1
n.a. Transposon Ty3-I Gag-Pol polyprotein; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6; TrEMBL-Plants: tr|A0A151R7Z9|A0A151R7Z9_CAJCA Retrovirus-related Pol polyprotein from transposon 17.6; Found in the gene: LotjaGi0g1v0001300_LC LjG1.1_chr0 1744651 1746795 +
2 domain predictions
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LotjaGi0g1v0002500_LC.1
n.a. Transposon Ty3-I Gag-Pol polyprotein; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6; TrEMBL-Plants: tr|A0A151R7Z9|A0A151R7Z9_CAJCA Retrovirus-related Pol polyprotein from transposon 17.6; Found in the gene: LotjaGi0g1v0002500_LC LjG1.1_chr0 2864012 2866166 -
2 domain predictions
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LotjaGi0g1v0002600_LC.1
n.a. Transposon Ty3-I Gag-Pol polyprotein; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6; TrEMBL-Plants: tr|A0A178U8C0|A0A178U8C0_ARATH Uncharacterized protein; Found in the gene: LotjaGi0g1v0002600_LC LjG1.1_chr0 2947128 2949281 -
2 domain predictions
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LotjaGi0g1v0002700_LC.1
n.a. Transposon Ty3-I Gag-Pol polyprotein; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6; TrEMBL-Plants: tr|A0A178U8C0|A0A178U8C0_ARATH Uncharacterized protein; Found in the gene: LotjaGi0g1v0002700_LC LjG1.1_chr0 3023284 3025437 -
2 domain predictions
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LotjaGi0g1v0002800_LC.1
n.a. Transposon Ty3-I Gag-Pol polyprotein; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6; TrEMBL-Plants: tr|A0A178U8C0|A0A178U8C0_ARATH Uncharacterized protein; Found in the gene: LotjaGi0g1v0002800_LC LjG1.1_chr0 3098237 3100390 -
2 domain predictions
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LotjaGi1g1v0003200_LC.1
n.a. Pol polyprotein; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|Q9UR07|TF211_SCHPO Transposon Tf2-11 polyprotein; TrEMBL-Plants: tr|A0A151T1H3|A0A151T1H3_CAJCA Transposon Ty3-G Gag-Pol polyprotein; Found in the gene: LotjaGi1g1v0003200_LC LjG1.1_chr1 712323 712689 +
2 domain predictions
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LotjaGi1g1v0009100_LC.1
n.a. Transposon TX1 uncharacterized; TAIR: AT1G43760.1 DNAse I-like superfamily protein; Swiss-Prot: sp|P14381|YTX2_XENLA Transposon TX1 uncharacterized 149 kDa protein; TrEMBL-Plants: tr|A0A151SF42|A0A151SF42_CAJCA Transposon TX1 uncharacterized; Found in the gene: LotjaGi1g1v0009100_LC LjG1.1_chr1 1181503 1185305 -
2 domain predictions
 –