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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0223199 |
| Transcript ID | Lj0g3v0223199.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Glycine max] gi|356546416|ref|XP_003541622.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 106 | 106 | 1.30E-55 | – | |
| PANTHER | 1 | 106 | 106 | 1.30E-55 | – | |
| SUPERFAMILY | 55 | 96 | 42 | 3.74E-09 | ||
| PANTHER | 124 | 160 | 37 | 1.30E-55 | – | |
| PANTHER | 124 | 160 | 37 | 1.30E-55 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Pseudouridine synthesis | The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Biological process | RNA modification | The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. | ||
| Molecular function | Pseudouridine synthase activity | Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5. |
Expression pattern of Lj0g3v0223199.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0223199.1, powered by CORGI.
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