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Lj0g3v0223519.1

Overview

Field Value
Gene ID Lj0g3v0223519
Transcript ID Lj0g3v0223519.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable sulfate transporter 3.3-like [Glycine max] gi|356519768|ref|XP_003528541.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11814
1 162 162 1.10E-87
IPR001902
PANTHER
PTHR11814:SF93
1 162 162 1.10E-87
IPR030313
ProSiteProfiles
PS50801
25 147 123 24.19
IPR002645
CDD
cd07042
26 140 115 5.79E-22 –
Pfam
PF01740
26 143 118 1.10E-25
IPR002645
Gene3D
G3DSA:3.30.750.24
30 148 119 1.10E-17
IPR002645
SUPERFAMILY
SSF52091
30 147 118 8.44E-16
IPR002645
MobiDBLite
mobidb-lite
149 169 21 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008271
Molecular function Secondary active sulfate transmembrane transporter activity Enables the secondary active transfer of sulfate from one side of a membrane to the other. Secondary active transport is the transfer of a solute across a membrane, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Secondary active transporters include symporters and antiporters.
Subterm of
GO:0008272
Biological process Sulfate transport The directed movement of sulfate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
Subterm of
GO:0016020
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
Subterm of
GO:0055085
Biological process Transmembrane transport The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.
Subterm of

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj0g3v0223519.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0223519.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.