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Lj0g3v0240279.1

Overview

Field Value
Gene ID Lj0g3v0240279
Transcript ID Lj0g3v0240279.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: WRKY transcription factor 6 [Glycine max] gi|356547095|ref|XP_003541953.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 23 23 – –
PANTHER
PTHR31429
13 543 531 2.60E-293 –
PANTHER
PTHR31429:SF10
13 543 531 2.60E-293 –
MobiDBLite
mobidb-lite
39 69 31 – –
Coils
Coil
121 141 21 – –
MobiDBLite
mobidb-lite
204 270 67 – –
Gene3D
G3DSA:2.20.25.80
277 353 77 2.60E-33
IPR003657
SUPERFAMILY
SSF118290
285 353 69 3.92E-27
IPR003657
ProSiteProfiles
PS50811
287 353 67 29.149
IPR003657
SMART
SM00774
292 352 61 1.50E-35
IPR003657
Pfam
PF03106
294 351 58 4.60E-26
IPR003657
MobiDBLite
mobidb-lite
463 485 23 – –
MobiDBLite
mobidb-lite
518 545 28 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

Genome browser

LORE1 insertions 12

Expression data

Expression pattern

Expression pattern of Lj0g3v0240279.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0240279.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.