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Lj0g3v0247649.1

Overview

Field Value
Gene ID Lj0g3v0247649
Transcript ID Lj0g3v0247649.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: serpin-ZX-like [Glycine max] gi|356510338|ref|XP_003523896.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11461:SF171
1 393 393 2.30E-183 –
PANTHER
PTHR11461
1 393 393 2.30E-183
IPR000215
SUPERFAMILY
SSF56574
6 389 384 3.93E-107
IPR023796
Pfam
PF00079
10 389 380 2.10E-100
IPR023796
Gene3D
G3DSA:3.30.497.10
10 176 167 3.10E-71 –
SMART
SM00093
15 389 375 7.00E-93
IPR023796
TMHMM
TMhelix
32 54 23 – –
Gene3D
G3DSA:2.30.39.10
177 284 108 2.60E-40 –
Gene3D
G3DSA:3.30.497.10
285 339 55 3.10E-71 –
Gene3D
G3DSA:2.30.39.10
340 389 50 2.60E-40 –
ProSitePatterns
PS00284
362 372 11 –
IPR023795
MobiDBLite
mobidb-lite
417 468 52 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005615
Cellular component Extracellular space That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
Subterm of

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj0g3v0247649.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0247649.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.