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Lj0g3v0253159.1

Overview

Field Value
Gene ID Lj0g3v0253159
Transcript ID Lj0g3v0253159.1
Lotus japonicus genome version MG20 v3.0
Description B3 domain-containing protein [Medicago truncatula] gi|357521093|ref|XP_003630835.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31674:SF1
1 168 168 1.20E-83 –
PANTHER
PTHR31674
1 168 168 1.20E-83 –
SUPERFAMILY
SSF101936
11 107 97 6.67E-19
IPR015300
Gene3D
G3DSA:2.40.330.10
13 107 95 9.20E-19
IPR015300
ProSiteProfiles
PS50863
13 107 95 12.52
IPR003340
CDD
cd10017
13 105 93 3.12E-12
IPR003340
SMART
SM01019
14 107 94 1.10E-12
IPR003340
Pfam
PF02362
14 106 93 4.20E-12
IPR003340
MobiDBLite
mobidb-lite
140 195 56 – –
Gene3D
G3DSA:2.40.330.10
226 322 97 1.70E-25
IPR015300
SUPERFAMILY
SSF101936
226 323 98 2.16E-23
IPR015300
PANTHER
PTHR31674:SF1
227 439 213 1.20E-83 –
PANTHER
PTHR31674
227 439 213 1.20E-83 –
CDD
cd10017
231 322 92 4.49E-20
IPR003340
ProSiteProfiles
PS50863
231 324 94 13.422
IPR003340
SMART
SM01019
233 324 92 2.10E-19
IPR003340
Pfam
PF02362
239 321 83 1.90E-17
IPR003340
MobiDBLite
mobidb-lite
319 343 25 – –
Gene3D
G3DSA:2.40.330.10
347 449 103 3.50E-19
IPR015300
SUPERFAMILY
SSF101936
348 449 102 1.33E-16
IPR015300
CDD
cd10017
353 449 97 1.48E-15
IPR003340
ProSiteProfiles
PS50863
354 450 97 10.941
IPR003340
SMART
SM01019
354 449 96 2.90E-07
IPR003340
Pfam
PF02362
369 445 77 9.30E-12
IPR003340

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 13

Expression data

Expression pattern

Expression pattern of Lj0g3v0253159.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0253159.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.