Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj0g3v0254189.1

Overview

Field Value
Gene ID Lj0g3v0254189
Transcript ID Lj0g3v0254189.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: BTB/POZ domain-containing protein At5g48800-like [Glycine max] gi|356504266|ref|XP_003520918.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR32370
1 606 606 0 –
PANTHER
PTHR32370:SF21
1 606 606 0 –
Gene3D
G3DSA:3.30.710.10
13 115 103 1.50E-11 –
SUPERFAMILY
SSF54695
18 115 98 1.49E-14
IPR011333
Pfam
PF00651
29 114 86 4.50E-05
IPR000210
ProSiteProfiles
PS50097
30 98 69 9.765
IPR000210
Pfam
PF03000
203 460 258 4.60E-87
IPR027356
ProSiteProfiles
PS51649
203 485 283 91.543
IPR027356
Coils
Coil
523 557 35 – –
MobiDBLite
mobidb-lite
581 611 31 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 15

Expression data

Expression pattern

Expression pattern of Lj0g3v0254189.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0254189.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.