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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0254999 |
| Transcript ID | Lj0g3v0254999.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: 50S ribosomal protein L15-like isoform 1 [Glycine max] gi|356557058|ref|XP_003546835.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | – | – | |
| Phobius | 1 | 20 | 20 | – | – | |
| Phobius | 6 | 14 | 9 | – | – | |
| PANTHER | 9 | 269 | 261 | 4.20E-116 | ||
| PANTHER | 9 | 269 | 261 | 4.20E-116 | – | |
| Phobius | 15 | 20 | 6 | – | – | |
| Phobius | 21 | 279 | 259 | – | – | |
| TIGRFAM | 65 | 211 | 147 | 1.00E-37 | ||
| Hamap | 65 | 214 | 150 | 18.202 | ||
| SUPERFAMILY | 73 | 215 | 143 | 1.44E-34 | ||
| MobiDBLite | 80 | 123 | 44 | – | – | |
| Pfam | 88 | 211 | 124 | 4.00E-29 | ||
| Gene3D | 93 | 213 | 121 | 1.10E-16 | – | |
| MobiDBLite | 236 | 259 | 24 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. | ||
| Cellular component | Large ribosomal subunit | The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). |
Expression pattern of Lj0g3v0254999.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0254999.1, powered by CORGI.
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