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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0277309 |
| Transcript ID | Lj0g3v0277309.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Transmembrane isoform 1 [Theobroma cacao] gi|508712286|gb|EOY04183.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 44 | 44 | – | – | |
| Phobius | 45 | 71 | 27 | – | – | |
| TMHMM | 49 | 71 | 23 | – | – | |
| SUPERFAMILY | 65 | 157 | 93 | 5.75E-07 | – | |
| Phobius | 72 | 82 | 11 | – | – | |
| TMHMM | 80 | 102 | 23 | – | – | |
| Phobius | 83 | 102 | 20 | – | – | |
| Phobius | 103 | 113 | 11 | – | – | |
| TMHMM | 112 | 134 | 23 | – | – | |
| Phobius | 114 | 132 | 19 | – | – | |
| Phobius | 133 | 143 | 11 | – | – | |
| TMHMM | 141 | 163 | 23 | – | – | |
| Phobius | 144 | 162 | 19 | – | – | |
| Phobius | 163 | 181 | 19 | – | – | |
| Phobius | 182 | 200 | 19 | – | – | |
| TMHMM | 183 | 205 | 23 | – | – | |
| Phobius | 201 | 219 | 19 | – | – | |
| TMHMM | 218 | 240 | 23 | – | – | |
| Phobius | 220 | 240 | 21 | – | – | |
| PANTHER | 233 | 358 | 126 | 1.80E-74 | – | |
| PANTHER | 233 | 358 | 126 | 1.80E-74 | ||
| Phobius | 241 | 251 | 11 | – | – | |
| Phobius | 252 | 271 | 20 | – | – | |
| TMHMM | 255 | 274 | 20 | – | – | |
| Phobius | 272 | 282 | 11 | – | – | |
| TMHMM | 281 | 303 | 23 | – | – | |
| Phobius | 283 | 303 | 21 | – | – | |
| Phobius | 304 | 308 | 5 | – | – | |
| TMHMM | 307 | 329 | 23 | – | – | |
| Phobius | 309 | 329 | 21 | – | – | |
| Phobius | 330 | 358 | 29 | – | – | |
| MobiDBLite | 335 | 358 | 24 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cation transport | The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Cation transmembrane transporter activity | Enables the transfer of cation from one side of a membrane to the other. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj0g3v0277309.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0277309.1, powered by CORGI.
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