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Lj0g3v0296569.1

Overview

Field Value
Gene ID Lj0g3v0296569
Transcript ID Lj0g3v0296569.1
Lotus japonicus genome version MG20 v3.0
Description F-box family protein [Medicago truncatula] gi|357471471|ref|XP_003606020.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR32212
1 355 355 1.90E-88 –
PANTHER
PTHR32212:SF65
1 355 355 1.90E-88 –
SUPERFAMILY
SSF81383
16 75 60 1.83E-09
IPR001810
Gene3D
G3DSA:3.80.10.10
22 343 322 3.80E-12
IPR032675
Pfam
PF00646
26 62 37 3.70E-05
IPR001810
SUPERFAMILY
SSF52047
123 342 220 1.26E-05 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

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LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj0g3v0296569.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0296569.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.