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Lj0g3v0301319.1

Overview

Field Value
Gene ID Lj0g3v0301319
Transcript ID Lj0g3v0301319.1
Lotus japonicus genome version MG20 v3.0
Description DDT; Homeodomain-related [Medicago truncatula] gi|124360728|gb|ABN08705.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 53 53 – –
PANTHER
PTHR24326
7 122 116 7.70E-46 –
PANTHER
PTHR24326:SF290
7 122 116 7.70E-46 –
Gene3D
G3DSA:1.10.10.60
24 100 77 3.60E-18
IPR009057
SUPERFAMILY
SSF46689
36 102 67 9.41E-17
IPR009057
ProSiteProfiles
PS50071
40 100 61 16.066
IPR001356
SMART
SM00389
42 104 63 5.00E-17
IPR001356
Pfam
PF00046
44 99 56 1.40E-15
IPR001356
CDD
cd00086
45 101 57 7.68E-16 –
MobiDBLite
mobidb-lite
127 158 32 – –
PANTHER
PTHR24326
166 171 6 7.70E-46 –
PANTHER
PTHR24326:SF290
166 171 6 7.70E-46 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 7

Expression data

Expression pattern

Expression pattern of Lj0g3v0301319.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0301319.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.