Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR009057
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 1036 results. Now displaying 1 of 21 with 50 rows per page. This search has taken 5.744s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0020039.1
n.a. Myb domain protein 5 isoform 1 [Theobroma cacao] gi|508717011|gb|EOY08908.1| chr0 7982153 7983626 +
3 domain predictions
1 GO term
Lj0g3v0042839.1
n.a. PREDICTED: transcription factor CPC [Vitis vinifera] gi|225444383|ref|XP_002267669.1| chr0 14076507 14077154 -
3 domain predictions
1 GO term
Lj0g3v0042839.2
n.a. PREDICTED: transcription factor CPC-like [Glycine max] gi|356543732|ref|XP_003540314.1| chr0 14076507 14078119 -
3 domain predictions
1 GO term
Lj0g3v0050029.1
n.a. Response regulator [Medicago truncatula] gi|357463135|ref|XP_003601849.1| chr0 16970859 16975533 +
3 domain predictions
1 GO term
Lj0g3v0057319.1
n.a. Lin-9-like protein [Medicago truncatula] gi|357441687|ref|XP_003591121.1| chr0 18784878 18787603 +
3 domain predictions
1 GO term
Lj0g3v0057839.1
n.a. BEL1-like homeodomain protein [Medicago truncatula] gi|357438117|ref|XP_003589334.1| chr0 19000164 19004860 -
3 domain predictions
1 GO term
Lj0g3v0058889.1
n.a. PREDICTED: ZF-HD homeobox protein At4g24660-like [Glycine max] gi|356522109|ref|XP_003529692.1| chr0 19426472 19428679 +
3 domain predictions
1 GO term
Lj0g3v0060059.1
n.a. PREDICTED: transcriptional adapter ADA2b-like [Glycine max] gi|356557975|ref|XP_003547285.1| chr0 19969290 19974373 -
3 domain predictions
1 GO term
Lj0g3v0068589.1
n.a. Transcription factor [Medicago truncatula] gi|357453385|ref|XP_003596969.1| chr0 24584195 24586538 +
3 domain predictions
1 GO term
Lj0g3v0072079.1
n.a. PREDICTED: homeobox-leucine zipper protein ATHB-7-like [Glycine max] gi|356520247|ref|XP_003528775.1| chr0 26615721 26617426 +
3 domain predictions
1 GO term
Lj0g3v0078699.1
n.a. PREDICTED: two-component response regulator ARR12-like isoform X1 [Cicer arietinum] gi|502149920|ref|XP_004507711.1| chr0 30323301 30324157 +
3 domain predictions
1 GO term
Lj0g3v0080089.1
n.a. PREDICTED: transcription factor GAMYB-like [Glycine max] gi|356550909|ref|XP_003543825.1| chr0 31010352 31016791 -
3 domain predictions
1 GO term
Lj0g3v0082879.1
n.a. PREDICTED: myb-related protein Myb4-like [Glycine max] gi|356533659|ref|XP_003535378.1| chr0 32643233 32644558 +
3 domain predictions
1 GO term
Lj0g3v0082899.2
n.a. PREDICTED: cell division cycle 5-like protein-like [Glycine max] gi|356535202|ref|XP_003536137.1| chr0 32645944 32652191 +
3 domain predictions
1 GO term
Lj0g3v0083039.1
n.a. homeobox protein knotted-1-like 2-like [Glycine max] gi|388556558|ref|NP_001253999.1| chr0 32735870 32741850 -
3 domain predictions
1 GO term
Lj0g3v0085519.1
n.a. PREDICTED: myb-like protein Q-like [Cicer arietinum] gi|502096160|ref|XP_004490644.1| chr0 34236187 34237669 +
3 domain predictions
1 GO term
Lj0g3v0086419.1
n.a. PREDICTED: homeobox protein ATH1-like isoform X1 [Cicer arietinum] gi|502125406|ref|XP_004498911.1| chr0 34899267 34904701 +
3 domain predictions
1 GO term
Lj0g3v0089499.1
n.a. PREDICTED: transcription repressor KAN1-like isoform X1 [Cicer arietinum] gi|502137504|ref|XP_004503104.1| chr0 36732316 36737500 -
3 domain predictions
1 GO term
Lj0g3v0089499.2
n.a. PREDICTED: transcription repressor KAN1-like isoform X1 [Cicer arietinum] gi|502137504|ref|XP_004503104.1| chr0 36732316 36737500 -
3 domain predictions
1 GO term
Lj0g3v0089699.1
n.a. MYB transcription factor MYB109 [Glycine max] gi|351727817|ref|NP_001235894.1| chr0 36855445 36857239 -
3 domain predictions
1 GO term
Lj0g3v0091669.1
n.a. PREDICTED: transcription factor MYB113-like [Glycine max] gi|356520958|ref|XP_003529126.1| chr0 37989245 37990707 +
3 domain predictions
1 GO term
Lj0g3v0094629.1
n.a. tannin-related R2R3 MYB transcription factor, partial [Medicago truncatula] gi|387135354|gb|AFJ53058.1| chr0 39783254 39785228 -
3 domain predictions
1 GO term
Lj0g3v0096229.1
n.a. PREDICTED: SWI/SNF complex subunit SWI3A-like [Cicer arietinum] gi|502133322|ref|XP_004501720.1| chr0 40572768 40574260 +
2 domain predictions
1 GO term
Lj0g3v0096579.1
n.a. PREDICTED: protein ODORANT1-like [Cicer arietinum] gi|502117524|ref|XP_004495851.1| chr0 40747877 40749905 -
3 domain predictions
1 GO term
Lj0g3v0103139.1
n.a. PREDICTED: homeobox-leucine zipper protein HAT22-like [Glycine max] gi|356541549|ref|XP_003539237.1| chr0 43979335 43981480 +
3 domain predictions
1 GO term
Lj0g3v0104249.1
n.a. PREDICTED: transcription factor MYB113-like [Glycine max] gi|356520958|ref|XP_003529126.1| chr0 44570927 44571400 +
3 domain predictions
1 GO term
Lj0g3v0107919.1
n.a. PREDICTED: transcription factor MYB48-like [Cicer arietinum] gi|502082003|ref|XP_004487036.1| chr0 46569730 46570150 +
3 domain predictions
1 GO term
Lj0g3v0107919.2
n.a. Myb-like transcription factor [Medicago truncatula] gi|357454091|ref|XP_003597326.1| chr0 46569733 46570150 +
3 domain predictions
1 GO term
Lj0g3v0107919.3
n.a. MYB transcription factor MYB139 [Glycine max] gi|351722983|ref|NP_001235983.1| chr0 46569793 46570150 +
3 domain predictions
1 GO term
Lj0g3v0109229.1
n.a. MYB-type transcription factor [Lotus japonicus] gi|283132363|dbj|BAI63587.1| chr0 47252336 47254764 -
3 domain predictions
1 GO term
Lj0g3v0115219.1
n.a. PREDICTED: transcriptional activator Myb-like [Glycine max] gi|356570355|ref|XP_003553355.1| chr0 50644913 50646550 +
3 domain predictions
1 GO term
Lj0g3v0115319.2
n.a. PREDICTED: TSL-kinase interacting protein 1-like [Glycine max] gi|356559298|ref|XP_003547937.1| chr0 50675535 50684687 -
3 domain predictions
1 GO term
Lj0g3v0116239.1
n.a. protein TRF-like 10 [Arabidopsis thaliana] gi|30680203|ref|NP_195998.2| chr0 51095696 51102635 +
3 domain predictions
1 GO term
Lj0g3v0116239.2
n.a. Uncharacterized protein isoform 2 [Theobroma cacao] gi|508701719|gb|EOX93615.1| chr0 51095696 51102635 +
3 domain predictions
1 GO term
Lj0g3v0116289.1
n.a. PREDICTED: glutamic acid-rich protein-like [Cicer arietinum] gi|502099577|ref|XP_004491513.1| chr0 51128617 51134725 -
2 domain predictions
1 GO term
Lj0g3v0117159.1
n.a. PREDICTED: cyclin-D-binding Myb-like transcription factor 1-like [Glycine max] gi|356548105|ref|XP_003542444.1| chr0 51629699 51632511 +
3 domain predictions
1 GO term
Lj0g3v0117159.2
n.a. PREDICTED: cyclin-D-binding Myb-like transcription factor 1-like [Glycine max] gi|356548105|ref|XP_003542444.1| chr0 51629699 51632511 +
3 domain predictions
1 GO term
Lj0g3v0117159.3
n.a. PREDICTED: cyclin-D-binding Myb-like transcription factor 1-like [Glycine max] gi|356548105|ref|XP_003542444.1| chr0 51629699 51632511 +
3 domain predictions
1 GO term
Lj0g3v0127839.1
n.a. PREDICTED: probable transcription factor KAN4-like [Glycine max] gi|356564221|ref|XP_003550354.1| chr0 57680753 57683381 -
3 domain predictions
1 GO term
Lj0g3v0129219.1
n.a. Two-component response regulator ARR1 [Medicago truncatula] gi|357483025|ref|XP_003611799.1| chr0 58467263 58469482 -
3 domain predictions
1 GO term
Lj0g3v0129839.1
n.a. PREDICTED: transcription factor MYB86-like [Glycine max] gi|356573440|ref|XP_003554868.1| chr0 58798995 58800821 +
3 domain predictions
1 GO term
Lj0g3v0134389.1
n.a. PREDICTED: WUSCHEL-related homeobox 8-like [Glycine max] gi|356546191|ref|XP_003541514.1| chr0 61561085 61563208 +
3 domain predictions
1 GO term
Lj0g3v0134389.2
n.a. PREDICTED: WUSCHEL-related homeobox 8-like [Glycine max] gi|356546191|ref|XP_003541514.1| chr0 61561085 61563208 +
3 domain predictions
1 GO term
Lj0g3v0135189.1
n.a. WUSCHEL-related homeobox [Medicago truncatula] gi|357492585|ref|XP_003616581.1| chr0 62071803 62072404 +
3 domain predictions
1 GO term
Lj0g3v0147679.1
n.a. MYB transcription factor MYB181 [Glycine max] gi|351726530|ref|NP_001235850.1| chr0 68290112 68293929 +
3 domain predictions
1 GO term
Lj0g3v0165349.1
n.a. PREDICTED: myb-related protein 315-like [Glycine max] gi|356573735|ref|XP_003555012.1| chr0 78489100 78491024 +
3 domain predictions
1 GO term
Lj0g3v0165839.1
n.a. MYB29 protein [Glycine max] gi|359807202|ref|NP_001241360.1| chr0 78743420 78747154 -
3 domain predictions
1 GO term
Lj0g3v0166299.1
n.a. MYB transcription factor MYB185 [Glycine max] gi|377823737|ref|NP_001235820.1| chr0 79093217 79093748 -
3 domain predictions
1 GO term
Lj0g3v0168929.1
n.a. PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Cicer arietinum] gi|502140212|ref|XP_004504111.1| chr0 80685917 80687928 +
3 domain predictions
1 GO term
Lj0g3v0172009.1
n.a. STENOFOLIA [Medicago truncatula] gi|342672239|gb|AEL30892.1| chr0 82532185 82533518 +
3 domain predictions
1 GO term