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Lj0g3v0303659.1

Overview

Field Value
Gene ID Lj0g3v0303659
Transcript ID Lj0g3v0303659.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: trihelix transcription factor GT-2 [Glycine max] gi|356499548|ref|XP_003518601.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR21654
1 152 152 3.60E-288 –
MobiDBLite
mobidb-lite
1 62 62 – –
PANTHER
PTHR21654:SF19
1 152 152 3.60E-288 –
SMART
SM00717
59 121 63 0.0025
IPR001005
ProSiteProfiles
PS50090
61 119 59 6.702
IPR017877
CDD
cd12203
61 126 66 2.89E-23 –
Pfam
PF13837
61 147 87 1.80E-18 –
MobiDBLite
mobidb-lite
150 198 49 – –
PANTHER
PTHR21654:SF19
201 383 183 3.60E-288 –
PANTHER
PTHR21654
201 383 183 3.60E-288 –
Coils
Coil
289 320 32 – –
MobiDBLite
mobidb-lite
369 398 30 – –
PANTHER
PTHR21654:SF19
424 644 221 3.60E-288 –
PANTHER
PTHR21654
424 644 221 3.60E-288 –
MobiDBLite
mobidb-lite
425 445 21 – –
SMART
SM00717
468 530 63 7.50E-05
IPR001005
Pfam
PF13837
470 557 88 8.70E-23 –
Gene3D
G3DSA:1.10.10.60
470 527 58 7.80E-05
IPR009057
ProSiteProfiles
PS50090
470 528 59 7.399
IPR017877
CDD
cd12203
470 535 66 1.92E-28 –
MobiDBLite
mobidb-lite
590 652 63 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 9

Expression data

Expression pattern

Expression pattern of Lj0g3v0303659.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0303659.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.