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Lj0g3v0304769.1

Overview

Field Value
Gene ID Lj0g3v0304769
Transcript ID Lj0g3v0304769.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description Regulator of nonsense transcripts-like protein [Medicago truncatula] gi|358349482|ref|XP_003638765.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10887
15 350 336 0 –
PANTHER
PTHR10887:SF372
15 350 336 0 –
Gene3D
G3DSA:3.40.50.300
233 351 119 9.10E-46
IPR027417
SUPERFAMILY
SSF52540
245 322 78 1.08E-53
IPR027417
Pfam
PF13086
249 625 377 1.10E-39 –
CDD
cd00046
274 321 48 8.86E-04 –
SUPERFAMILY
SSF52540
384 450 67 1.08E-53
IPR027417
Gene3D
G3DSA:3.40.50.300
390 416 27 9.10E-46
IPR027417
Coils
Coil
396 416 21 – –
PANTHER
PTHR10887
458 922 465 0 –
PANTHER
PTHR10887:SF372
458 922 465 0 –
SUPERFAMILY
SSF52540
553 845 293 1.08E-53
IPR027417
Gene3D
G3DSA:3.40.50.300
581 680 100 9.10E-46
IPR027417
Pfam
PF13087
634 830 197 3.10E-55 –
PANTHER
PTHR10887:SF372
1321 1339 19 0 –
PANTHER
PTHR10887
1321 1339 19 0 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 61

Expression data

Expression pattern

Expression pattern of Lj0g3v0304769.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0304769.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.