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Lj0g3v0321149.1

Overview

Field	Value
Gene ID	Lj0g3v0321149
Transcript ID	Lj0g3v0321149.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: F-box/LRR-repeat protein At4g14103-like isoform X1 [Cicer arietinum] gi\|502142314\|ref\|XP_004504896.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	31	31	–	–
PANTHER	PTHR32212:SF65 View details on PTHR32212:SF65 Search for proteins/transripts with this domain View external data on PTHR32212:SF65	6	353	348	1.80E-105	–
PANTHER	PTHR32212 View details on PTHR32212 Search for proteins/transripts with this domain View external data on PTHR32212	6	353	348	1.80E-105	–
Gene3D	G3DSA:3.80.10.10 View details on G3DSA:3.80.10.10 Search for proteins/transripts with this domain View external data on G3DSA:3.80.10.10	27	323	297	9.10E-14	IPR032675 Show description in modal box View details on IPR032675 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF81383 View details on SSF81383 Search for proteins/transripts with this domain View external data on SSF81383	30	86	57	5.36E-11	IPR001810 Show description in modal box View details on IPR001810 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF00646 View details on PF00646 Search for proteins/transripts with this domain View external data on PF00646	32	71	40	1.70E-05	IPR001810 Show description in modal box View details on IPR001810 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF52047 View details on SSF52047 Search for proteins/transripts with this domain View external data on SSF52047	76	358	283	1.92E-06	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005515 View details of GO:0005515 AmiGO InterPro QuickGO	Molecular function	Protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).	Subterm of View details of GO:0005488

Genome browser

LORE1 insertions 12

Expression data

Expression pattern

Expression pattern of Lj0g3v0321149.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0321149.1, powered by CORGI.

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