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Lj0g3v0325919.1

Overview

Field Value
Gene ID Lj0g3v0325919
Transcript ID Lj0g3v0325919.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: translation initiation factor IF-3-like [Glycine max] gi|356574143|ref|XP_003555211.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10938:SF2
1 315 315 5.00E-113 –
PANTHER
PTHR10938
1 315 315 5.00E-113
IPR001288
Gene3D
G3DSA:3.10.20.80
80 151 72 6.00E-25
IPR019814
SUPERFAMILY
SSF54364
81 153 73 1.31E-20
IPR019814
TIGRFAM
TIGR00168
84 242 159 1.90E-27
IPR001288
Pfam
PF05198
84 150 67 5.80E-24
IPR019814
Coils
Coil
135 162 28 – –
Gene3D
G3DSA:3.30.110.10
163 246 84 4.50E-15
IPR019815
Pfam
PF00707
164 242 79 2.70E-08
IPR019815
SUPERFAMILY
SSF55200
164 246 83 6.93E-11
IPR019815
MobiDBLite
mobidb-lite
248 284 37 – –
MobiDBLite
mobidb-lite
306 384 79 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003743
Molecular function Translation initiation factor activity Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
Subterm of
GO:0006413
Biological process Translational initiation The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA.
Subterm of
Part of

Genome browser

LORE1 insertions 9

Expression data

Expression pattern

Expression pattern of Lj0g3v0325919.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0325919.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.