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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0340729 |
| Transcript ID | Lj0g3v0340729.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | B3 domain-containing protein [Medicago truncatula] gi|357521093|ref|XP_003630835.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 9 | 110 | 102 | 3.10E-14 | ||
| SUPERFAMILY | 10 | 110 | 101 | 3.73E-14 | ||
| ProSiteProfiles | 13 | 110 | 98 | 11.11 | ||
| CDD | 13 | 108 | 96 | 2.61E-08 | ||
| SMART | 14 | 110 | 97 | 3.60E-06 | ||
| Pfam | 14 | 109 | 96 | 1.20E-08 | ||
| PANTHER | 114 | 281 | 168 | 2.50E-73 | – | |
| PANTHER | 114 | 281 | 168 | 2.50E-73 | – | |
| Gene3D | 125 | 223 | 99 | 7.30E-20 | ||
| SUPERFAMILY | 126 | 223 | 98 | 7.85E-21 | ||
| ProSiteProfiles | 130 | 223 | 94 | 12.393 | ||
| CDD | 130 | 221 | 92 | 3.92E-14 | ||
| SMART | 131 | 223 | 93 | 2.60E-14 | ||
| Pfam | 135 | 222 | 88 | 9.80E-14 | ||
| MobiDBLite | 232 | 282 | 51 | – | – | |
| PANTHER | 314 | 517 | 204 | 2.50E-73 | – | |
| PANTHER | 314 | 517 | 204 | 2.50E-73 | – | |
| Gene3D | 315 | 406 | 92 | 1.20E-19 | ||
| SUPERFAMILY | 316 | 406 | 91 | 3.73E-18 | ||
| ProSiteProfiles | 319 | 409 | 91 | 13.831 | ||
| CDD | 320 | 407 | 88 | 2.29E-18 | ||
| SMART | 320 | 409 | 90 | 8.60E-16 | ||
| Pfam | 322 | 407 | 86 | 1.10E-18 | ||
| SUPERFAMILY | 424 | 526 | 103 | 5.69E-17 | ||
| Gene3D | 424 | 526 | 103 | 4.10E-18 | ||
| CDD | 429 | 526 | 98 | 3.59E-13 | ||
| ProSiteProfiles | 430 | 528 | 99 | 11.053 | ||
| SMART | 431 | 528 | 98 | 2.50E-09 | ||
| Pfam | 447 | 525 | 79 | 1.10E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of Lj0g3v0340729.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0340729.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.