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Lj0g3v0343589.1

Overview

Field Value
Gene ID Lj0g3v0343589
Transcript ID Lj0g3v0343589.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: RNA-binding protein 38-like isoform X1 [Cicer arietinum] gi|502180082|ref|XP_004516562.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF54928
9 119 111 8.60E-27
IPR012677
Gene3D
G3DSA:3.30.70.330
12 107 96 5.20E-25
IPR012677
PANTHER
PTHR24012:SF421
12 98 87 3.20E-41 –
PANTHER
PTHR24012
12 98 87 3.20E-41 –
CDD
cd12384
16 91 76 3.99E-44 –
ProSiteProfiles
PS50102
16 93 78 16.654
IPR000504
SMART
SM00360
17 89 73 5.50E-24
IPR000504
Pfam
PF00076
18 75 58 8.00E-17
IPR000504
PANTHER
PTHR24012
128 164 37 3.20E-41 –
PANTHER
PTHR24012:SF421
128 164 37 3.20E-41 –
MobiDBLite
mobidb-lite
230 269 40 – –
PANTHER
PTHR24012:SF421
244 261 18 3.20E-41 –
PANTHER
PTHR24012
244 261 18 3.20E-41 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

Genome browser

LORE1 insertions 39

Expression data

Expression pattern

Expression pattern of Lj0g3v0343589.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0343589.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.