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Lj0g3v0343789.1

Overview

Field Value
Gene ID Lj0g3v0343789
Transcript ID Lj0g3v0343789.1
Lotus japonicus genome version MG20 v3.0
Description photosystem II protein K [Lotus japonicus] gi|13518445|ref|NP_084805.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 38 38 – –
PANTHER
PTHR35325
2 61 60 7.50E-33 –
PANTHER
PTHR35325:SF1
2 61 60 7.50E-33 –
TMHMM
TMhelix
2 21 20 – –
Pfam
PF02533
21 61 41 5.40E-24
IPR003687
Hamap
MF_00441
23 61 39 18.538
IPR003687
ProDom
PD004458
23 61 39 5.00E-15
IPR003687
SUPERFAMILY
SSF161037
25 61 37 1.83E-17 –
TMHMM
TMhelix
36 58 23 – –
Phobius
TRANSMEMBRANE
39 60 22 – –
Phobius
CYTOPLASMIC_DOMAIN
61 61 1 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0009523
Cellular component Photosystem II A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center.
Subterm of
GO:0009539
Cellular component Photosystem II reaction center An integral membrane complex containing P680, the chlorophyll a molecule that functions as a primary electron donor. In the light, functioning as a water-plastoquinone oxidoreductase, it transfers electrons from water to plastoquinone.
Subterm of
Part of
GO:0015979
Biological process Photosynthesis The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj0g3v0343789.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0343789.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.