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Lj0g3v0348739.2

Overview

Field Value
Gene ID Lj0g3v0348739
Transcript ID Lj0g3v0348739.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description WW domain-containing protein [Arabidopsis thaliana] gi|79400098|ref|NP_187930.2|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite 26 48 23
SUPERFAMILY 77 112 36 5.98E-08
ProSiteProfiles 78 112 35 13.28
SMART 79 112 34 1.40E-06
CDD 82 110 29 2.47E-05
Pfam 82 110 29 7.20E-10
ProSitePatterns 84 110 27
Gene3D 94 113 20 5.90E-06
MobiDBLite 475 530 56
MobiDBLite 670 696 27
Coils 695 715 21
MobiDBLite 742 786 45
SUPERFAMILY 793 827 35 1.91E-08
Gene3D 794 826 33 1.30E-08
ProSiteProfiles 794 828 35 13.93
SMART 795 828 34 7.10E-07
Pfam 796 826 31 7.40E-09
ProSitePatterns 800 826 27

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

LORE1 insertions 12

Expression data

Expression pattern

Expression pattern of Lj0g3v0348739.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0348739.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.