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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0353039 |
| Transcript ID | Lj0g3v0353039.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | SAM (and some other nucleotide) binding motif; WW/Rsp5/WWP [Medicago truncatula] gi|87240722|gb|ABD32580.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 183 | 509 | 327 | 1.80E-83 | – | |
| PANTHER | 183 | 509 | 327 | 1.80E-83 | – | |
| SUPERFAMILY | 193 | 224 | 32 | 3.25E-05 | ||
| ProSiteProfiles | 197 | 225 | 29 | 9.891 | ||
| ProSitePatterns | 197 | 223 | 27 | – | ||
| CDD | 206 | 225 | 20 | 0.00736048 | – | |
| Gene3D | 207 | 227 | 21 | 1.90E-04 | – | |
| MobiDBLite | 222 | 277 | 56 | – | – | |
| MobiDBLite | 354 | 376 | 23 | – | – | |
| Gene3D | 425 | 508 | 84 | 4.40E-24 | ||
| SUPERFAMILY | 435 | 507 | 73 | 9.77E-17 | ||
| CDD | 446 | 507 | 62 | 1.43E-07 | – | |
| Pfam | 446 | 509 | 64 | 4.50E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | RNA methylation | Posttranscriptional addition of a methyl group to either a nucleotide or 2'-O ribose in a polyribonucleotide. Usually uses S-adenosylmethionine as a cofactor. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Methyltransferase activity | Catalysis of the transfer of a methyl group to an acceptor molecule. | ||
| Biological process | 7-methylguanosine RNA capping | The sequence of enzymatic reactions by which the 5' cap structure, an inverted 7-methylguanosine linked via a 5'-5' triphosphate bridge (m7G(5')ppp(5')X) to the first transcribed residue, is added to a nascent transcript. |
Expression pattern of Lj0g3v0353039.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0353039.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.