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Lj0g3v0358519.1

Overview

Field Value
Gene ID Lj0g3v0358519
Transcript ID Lj0g3v0358519.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: RNA and export factor-binding protein 2-like [Glycine max] gi|356539036|ref|XP_003538006.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.30.70.330
13 105 93 1.20E-21
IPR012677
SUPERFAMILY
SSF54928
16 102 87 2.31E-23
IPR012677
PANTHER
PTHR19965
19 189 171 1.60E-86 –
PANTHER
PTHR19965:SF29
19 189 171 1.60E-86 –
CDD
cd12680
27 101 75 4.46E-45 –
ProSiteProfiles
PS50102
27 104 78 16.244
IPR000504
SMART
SM00360
28 100 73 1.30E-18
IPR000504
Pfam
PF00076
29 98 70 9.50E-16
IPR000504
MobiDBLite
mobidb-lite
118 189 72 – –
SMART
SM01218
120 189 70 7.90E-12
IPR025715
Pfam
PF13865
127 185 59 1.10E-09
IPR025715

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj0g3v0358519.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0358519.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.