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Lj1g3v0116470.1

Overview

Field	Value
Gene ID	Lj1g3v0116470
Transcript ID	Lj1g3v0116470.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: parafibromin-like [Glycine max] gi\|356538299\|ref\|XP_003537641.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR12466:SF8 View details on PTHR12466:SF8 Search for proteins/transripts with this domain View external data on PTHR12466:SF8	1	391	391	8.90E-156	–
PANTHER	PTHR12466 View details on PTHR12466 Search for proteins/transripts with this domain View external data on PTHR12466	1	391	391	8.90E-156	IPR007852 Show description in modal box View details on IPR007852 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF16050 View details on PF16050 Search for proteins/transripts with this domain View external data on PF16050	2	104	103	1.50E-18	IPR032041 Show description in modal box View details on IPR032041 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF05179 View details on PF05179 Search for proteins/transripts with this domain View external data on PF05179	231	385	155	2.60E-48	IPR031336 Show description in modal box View details on IPR031336 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0006368 View details of GO:0006368 AmiGO InterPro QuickGO	Biological process	Transcription elongation from RNA polymerase II promoter	The extension of an RNA molecule after transcription initiation and promoter clearance at an RNA polymerase II promoter by the addition of ribonucleotides catalyzed by RNA polymerase II.	Subterm of View details of GO:0006354 Part of View details of GO:0006366
GO:0016570 View details of GO:0016570 AmiGO InterPro QuickGO	Biological process	Histone modification	The covalent alteration of one or more amino acid residues within a histone protein.	Subterm of View details of GO:0006464 View details of GO:0016569
GO:0016593 View details of GO:0016593 AmiGO InterPro QuickGO	Cellular component	Cdc73/Paf1 complex	A multiprotein complex that associates with RNA polymerase II and general RNA polymerase II transcription factor complexes and may be involved in both transcriptional initiation and elongation. In Saccharomyces the complex contains Paf1p, Cdc73p, Ctr9p, Rtf1p, and Leo1p.	Subterm of View details of GO:0008023 Part of View details of GO:0016591

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj1g3v0116470.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v0116470.1, powered by CORGI.

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