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Lj1g3v0414690.1

Overview

Field	Value
Gene ID	Lj1g3v0414690
Transcript ID	Lj1g3v0414690.1
Related isoforms 1	Lj1g3v0414690.2
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: probable 26S proteasome complex subunit sem1-1 [Glycine max] gi\|356508661\|ref\|XP_003523073.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR16771:SF1 View details on PTHR16771:SF1 Search for proteins/transripts with this domain View external data on PTHR16771:SF1	1	73	73	1.80E-36	–
PANTHER	PTHR16771 View details on PTHR16771 Search for proteins/transripts with this domain View external data on PTHR16771	1	73	73	1.80E-36	–
SMART	SM01385 View details on SM01385 Search for proteins/transripts with this domain View external data on SM01385	9	68	60	5.20E-21	IPR007834 Show description in modal box View details on IPR007834 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF05160 View details on PF05160 Search for proteins/transripts with this domain View external data on PF05160	10	67	58	1.10E-17	IPR007834 Show description in modal box View details on IPR007834 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	27	54	28	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0006406 View details of GO:0006406 AmiGO InterPro QuickGO	Biological process	MRNA export from nucleus	The directed movement of mRNA from the nucleus to the cytoplasm.	Subterm of View details of GO:0006405 View details of GO:0051028 Part of View details of GO:0010467 View details of GO:0071427
GO:0008541 View details of GO:0008541 AmiGO InterPro QuickGO	Cellular component	Proteasome regulatory particle, lid subcomplex	The subcomplex of the proteasome regulatory particle that forms the peripheral lid, which is added on top of the base subcomplex.	Subterm of View details of GO:0032991 View details of GO:0044424 Part of View details of GO:0005838
GO:0043248 View details of GO:0043248 AmiGO InterPro QuickGO	Biological process	Proteasome assembly	The aggregation, arrangement and bonding together of a mature, active proteasome complex.	Subterm of View details of GO:0034622

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj1g3v0414690.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v0414690.1, powered by CORGI.

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