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| Field | Value |
|---|---|
| Gene ID | Lj1g3v0806470 |
| Transcript ID | Lj1g3v0806470.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Auxin-induced protein 5NG4 [Medicago truncatula] gi|357461553|ref|XP_003601058.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | – | – | |
| PANTHER | 6 | 265 | 260 | 2.30E-172 | ||
| PANTHER | 6 | 265 | 260 | 2.30E-172 | – | |
| TMHMM | 20 | 39 | 20 | – | – | |
| Phobius | 20 | 40 | 21 | – | – | |
| Pfam | 29 | 147 | 119 | 3.90E-14 | ||
| Phobius | 41 | 45 | 5 | – | – | |
| Phobius | 46 | 68 | 23 | – | – | |
| TMHMM | 49 | 68 | 20 | – | – | |
| SUPERFAMILY | 52 | 147 | 96 | 1.70E-09 | – | |
| Phobius | 69 | 79 | 11 | – | – | |
| Phobius | 80 | 102 | 23 | – | – | |
| TMHMM | 80 | 102 | 23 | – | – | |
| Phobius | 103 | 107 | 5 | – | – | |
| TMHMM | 107 | 129 | 23 | – | – | |
| Phobius | 108 | 129 | 22 | – | – | |
| Phobius | 130 | 140 | 11 | – | – | |
| Phobius | 141 | 161 | 21 | – | – | |
| TMHMM | 142 | 161 | 20 | – | – | |
| Phobius | 162 | 189 | 28 | – | – | |
| TMHMM | 188 | 210 | 23 | – | – | |
| Phobius | 190 | 210 | 21 | – | – | |
| Phobius | 211 | 221 | 11 | – | – | |
| Phobius | 222 | 243 | 22 | – | – | |
| TMHMM | 222 | 244 | 23 | – | – | |
| Phobius | 244 | 248 | 5 | – | – | |
| Phobius | 249 | 267 | 19 | – | – | |
| Phobius | 268 | 289 | 22 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. |
Expression pattern of Lj1g3v0806470.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v0806470.1, powered by CORGI.
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