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| Field | Value |
|---|---|
| Gene ID | Lj1g3v0816040 |
| Transcript ID | Lj1g3v0816040.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: TLC domain-containing protein 2-like [Cicer arietinum] gi|502135838|ref|XP_004502470.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 6 | 6 | – | – | |
| PANTHER | 6 | 274 | 269 | 4.60E-101 | – | |
| PANTHER | 6 | 274 | 269 | 4.60E-101 | – | |
| TMHMM | 7 | 27 | 21 | – | – | |
| Phobius | 7 | 27 | 21 | – | – | |
| Phobius | 28 | 32 | 5 | – | – | |
| TMHMM | 32 | 54 | 23 | – | – | |
| Phobius | 33 | 54 | 22 | – | – | |
| Phobius | 55 | 60 | 6 | – | – | |
| SMART | 57 | 262 | 206 | 1.30E-27 | ||
| ProSiteProfiles | 57 | 274 | 218 | 16.115 | ||
| TMHMM | 61 | 83 | 23 | – | – | |
| Phobius | 61 | 84 | 24 | – | – | |
| Pfam | 62 | 250 | 189 | 2.00E-18 | ||
| Phobius | 85 | 103 | 19 | – | – | |
| Phobius | 104 | 122 | 19 | – | – | |
| TMHMM | 105 | 122 | 18 | – | – | |
| Phobius | 123 | 133 | 11 | – | – | |
| Phobius | 134 | 155 | 22 | – | – | |
| TMHMM | 134 | 156 | 23 | – | – | |
| Phobius | 156 | 160 | 5 | – | – | |
| TMHMM | 160 | 177 | 18 | – | – | |
| Phobius | 161 | 179 | 19 | – | – | |
| Phobius | 180 | 199 | 20 | – | – | |
| TMHMM | 198 | 220 | 23 | – | – | |
| Phobius | 200 | 223 | 24 | – | – | |
| Phobius | 224 | 234 | 11 | – | – | |
| TMHMM | 235 | 257 | 23 | – | – | |
| Phobius | 235 | 257 | 23 | – | – | |
| Coils | 257 | 276 | 20 | – | – | |
| Phobius | 258 | 276 | 19 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of Lj1g3v0816040.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v0816040.1, powered by CORGI.
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