Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj1g3v1091500.1

Overview

Field Value
Gene ID Lj1g3v1091500
Transcript ID Lj1g3v1091500.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: stomatin-like protein 2, mitochondrial-like [Cicer arietinum] gi|502136677|ref|XP_004502783.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10264:SF27
55 371 317 6.90E-178 –
PANTHER
PTHR10264
55 371 317 6.90E-178
IPR001972
SMART
SM00244
58 216 159 4.30E-54
IPR001107
Pfam
PF01145
62 232 171 6.50E-30
IPR001107
PRINTS
PR00721
65 87 23 2.10E-27
IPR001972
SUPERFAMILY
SSF117892
89 223 135 1.96E-39
IPR001107
CDD
cd08829
96 206 111 1.06E-60 –
PRINTS
PR00721
113 134 22 2.10E-27
IPR001972
PRINTS
PR00721
148 165 18 2.10E-27
IPR001972
PRINTS
PR00721
168 191 24 2.10E-27
IPR001972
PRINTS
PR00721
192 210 19 2.10E-27
IPR001972
PRINTS
PR00721
211 232 22 2.10E-27
IPR001972
Pfam
PF16200
282 341 60 7.30E-24
IPR032435
MobiDBLite
mobidb-lite
346 402 57 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016020
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
Subterm of

Genome browser

LORE1 insertions 24

Expression data

Expression pattern

Expression pattern of Lj1g3v1091500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v1091500.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.