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Lj1g3v1265910.1

Overview

Field Value
Gene ID Lj1g3v1265910
Transcript ID Lj1g3v1265910.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: trihelix transcription factor GT-2-like [Glycine max] gi|356530726|ref|XP_003533931.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 55 55 – –
PANTHER
PTHR21654
34 502 469 4.20E-241 –
PANTHER
PTHR21654:SF14
34 502 469 4.20E-241 –
SMART
SM00717
50 112 63 2.50E-04
IPR001005
CDD
cd12203
52 117 66 5.45E-24 –
Pfam
PF13837
52 140 89 1.80E-19 –
ProSiteProfiles
PS50090
52 110 59 7.399
IPR017877
SMART
SM00717
338 404 67 2.20E-06
IPR001005
Gene3D
G3DSA:1.10.10.60
339 401 63 1.30E-05
IPR009057
SUPERFAMILY
SSF46689
339 419 81 3.23E-05
IPR009057
CDD
cd12203
340 409 70 6.73E-24 –
Pfam
PF13837
340 431 92 5.40E-22 –
ProSiteProfiles
PS50090
340 402 63 7.863
IPR017877
MobiDBLite
mobidb-lite
435 507 73 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 9

Expression data

Expression pattern

Expression pattern of Lj1g3v1265910.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v1265910.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.