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| Field | Value |
|---|---|
| Gene ID | Lj1g3v1525900 |
| Transcript ID | Lj1g3v1525900.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Cicer arietinum] gi|502133204|ref|XP_004501684.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 18 | 18 | – | – | |
| Phobius | 1 | 1 | 1 | – | – | |
| Phobius | 1 | 15 | 15 | – | – | |
| Phobius | 2 | 10 | 9 | – | – | |
| Phobius | 11 | 15 | 5 | – | – | |
| Phobius | 16 | 305 | 290 | – | – | |
| PANTHER | 80 | 295 | 216 | 8.90E-40 | – | |
| PANTHER | 80 | 295 | 216 | 8.90E-40 | – | |
| Gene3D | 83 | 183 | 101 | 7.50E-23 | ||
| SUPERFAMILY | 88 | 187 | 100 | 1.28E-22 | ||
| ProSiteProfiles | 102 | 179 | 78 | 17.353 | ||
| SMART | 103 | 175 | 73 | 2.20E-17 | ||
| Pfam | 107 | 173 | 67 | 9.50E-14 | ||
| SUPERFAMILY | 186 | 277 | 92 | 9.40E-20 | ||
| Gene3D | 191 | 275 | 85 | 3.50E-20 | ||
| ProSiteProfiles | 196 | 275 | 80 | 16.415 | ||
| SMART | 197 | 271 | 75 | 1.10E-18 | ||
| Pfam | 198 | 269 | 72 | 1.40E-14 | ||
| MobiDBLite | 279 | 305 | 27 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of Lj1g3v1525900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v1525900.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.