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Lj1g3v1561430.1

Overview

Field Value
Gene ID Lj1g3v1561430
Transcript ID Lj1g3v1561430.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: WD and tetratricopeptide repeats protein 1-like [Glycine max] gi|356515704|ref|XP_003526538.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR15574
3 310 308 9.50E-148 –
PANTHER
PTHR15574:SF40
3 310 308 9.50E-148 –
Gene3D
G3DSA:2.130.10.10
39 311 273 4.00E-42
IPR015943
SMART
SM00320
39 78 40 1.60E-07
IPR001680
SUPERFAMILY
SSF50978
41 181 141 3.38E-34
IPR017986
Pfam
PF00400
44 78 35 8.10E-07
IPR001680
ProSiteProfiles
PS50294
46 132 87 18.246
IPR017986
ProSiteProfiles
PS50082
46 87 42 15.388
IPR001680
SMART
SM00320
81 123 43 0.0046
IPR001680
SMART
SM00320
136 176 41 0.65
IPR001680
SMART
SM00320
211 244 34 20
IPR001680
SUPERFAMILY
SSF50978
218 320 103 3.38E-34
IPR017986
SMART
SM00320
265 307 43 280
IPR001680

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 35

Expression data

Expression pattern

Expression pattern of Lj1g3v1561430.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v1561430.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.