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| Field | Value |
|---|---|
| Gene ID | Lj1g3v1585710 |
| Transcript ID | Lj1g3v1585710.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: ubiquitin carboxyl-terminal hydrolase 16-like [Glycine max] gi|356518408|ref|XP_003527871.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 117 | 191 | 75 | – | – | |
| MobiDBLite | 223 | 269 | 47 | – | – | |
| PANTHER | 334 | 653 | 320 | 9.00E-164 | – | |
| PANTHER | 334 | 653 | 320 | 9.00E-164 | – | |
| SUPERFAMILY | 335 | 644 | 310 | 4.12E-85 | – | |
| Pfam | 338 | 640 | 303 | 2.30E-46 | ||
| ProSiteProfiles | 338 | 643 | 306 | 52.277 | ||
| ProSitePatterns | 339 | 354 | 16 | – | ||
| Gene3D | 464 | 536 | 73 | 1.20E-12 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. | ||
| Biological process | Protein deubiquitination | The removal of one or more ubiquitin groups from a protein. | ||
| Molecular function | Thiol-dependent ubiquitinyl hydrolase activity | Catalysis of the thiol-dependent hydrolysis of an ester, thioester, amide, peptide or isopeptide bond formed by the C-terminal glycine of ubiquitin. |
Expression pattern of Lj1g3v1585710.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v1585710.1, powered by CORGI.
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