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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • SSF54001
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 428 results. Now displaying 1 of 9 with 50 rows per page. This search has taken 0.119s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0000069.1
n.a. cysteine proteinase [Lotus japonicus] gi|144905112|dbj|BAF56429.1| chr0 12894 14037 -
1 domain prediction
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Lj0g3v0008829.1
n.a. PREDICTED: ubiquitin carboxyl-terminal hydrolase 20-like [Cicer arietinum] gi|502154518|ref|XP_004509729.1| chr0 3586505 3588990 -
1 domain prediction
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Lj0g3v0008829.2
n.a. PREDICTED: ubiquitin carboxyl-terminal hydrolase 20-like [Cicer arietinum] gi|502154518|ref|XP_004509729.1| chr0 3586505 3588990 -
1 domain prediction
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Lj0g3v0008829.3
n.a. PREDICTED: ubiquitin carboxyl-terminal hydrolase 20-like [Cicer arietinum] gi|502154518|ref|XP_004509729.1| chr0 3588202 3588990 -
1 domain prediction
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Lj0g3v0042369.1
n.a. Ubiquitin-like-specific protease [Medicago truncatula] gi|357439203|ref|XP_003589878.1| chr0 13907272 13909169 +
1 domain prediction
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Lj0g3v0055079.1
n.a. PREDICTED: cathepsin B-like [Glycine max] gi|356572872|ref|XP_003554589.1| chr0 17728277 17733704 +
1 domain prediction
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Lj0g3v0077169.1
n.a. PREDICTED: ubiquitin carboxyl-terminal hydrolase 17-like [Glycine max] gi|356497712|ref|XP_003517703.1| chr0 29553088 29561385 -
1 domain prediction
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Lj0g3v0077169.2
n.a. PREDICTED: ubiquitin carboxyl-terminal hydrolase 17-like [Glycine max] gi|356497712|ref|XP_003517703.1| chr0 29553088 29561385 -
1 domain prediction
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Lj0g3v0081459.1
n.a. PREDICTED: ubiquitin carboxyl-terminal hydrolase 20-like [Cicer arietinum] gi|502154518|ref|XP_004509729.1| chr0 31827480 31828755 +
1 domain prediction
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Lj0g3v0081459.2
n.a. PREDICTED: ubiquitin carboxyl-terminal hydrolase 20-like [Cicer arietinum] gi|502154518|ref|XP_004509729.1| chr0 31827480 31829174 +
1 domain prediction
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Lj0g3v0081459.3
n.a. PREDICTED: ubiquitin carboxyl-terminal hydrolase 20-like [Cicer arietinum] gi|502154518|ref|XP_004509729.1| chr0 31827480 31829174 +
1 domain prediction
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Lj0g3v0085329.1
n.a. lecithin retinol acyltransferase domain protein [Arabidopsis thaliana] gi|18415178|ref|NP_568167.1| chr0 34135527 34138045 +
1 domain prediction
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Lj0g3v0092709.1
n.a. PREDICTED: ubiquitin carboxyl-terminal hydrolase 4-like [Glycine max] gi|356540277|ref|XP_003538616.1| chr0 38681696 38688371 +
1 domain prediction
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Lj0g3v0097589.1
n.a. PREDICTED: oryzain alpha chain-like [Cicer arietinum] gi|502131381|ref|XP_004500967.1| chr0 41271902 41273004 -
1 domain prediction
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Lj0g3v0101249.1
n.a. Senescence-associated gene 12 [Theobroma cacao] gi|508702326|gb|EOX94222.1| chr0 42921000 42924125 +
1 domain prediction
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Lj0g3v0127519.1
n.a. TNP1 [Medicago truncatula] gi|357491941|ref|XP_003616258.1| chr0 57493808 57497839 -
1 domain prediction
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Lj0g3v0129549.1
n.a. Calpain-like protein [Medicago truncatula] gi|357519297|ref|XP_003629937.1| chr0 58630780 58633904 +
1 domain prediction
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Lj0g3v0161679.1
n.a. PREDICTED: OTU domain-containing protein At3g57810-like [Cicer arietinum] gi|502122928|ref|XP_004497941.1| chr0 76078265 76083502 -
1 domain prediction
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Lj0g3v0162449.1
n.a. PREDICTED: LOW QUALITY PROTEIN: xylem cysteine proteinase 1-like [Cicer arietinum] gi|502078248|ref|XP_004485885.1| chr0 76605876 76607494 +
1 domain prediction
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Lj0g3v0169699.1
n.a. PREDICTED: xylem cysteine proteinase 1-like [Brachypodium distachyon] gi|357130141|ref|XP_003566711.1| chr0 81043982 81044829 +
1 domain prediction
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Lj0g3v0174179.1
n.a. Ubiquitin-like-specific protease [Medicago truncatula] gi|357439203|ref|XP_003589878.1| chr0 83919014 83926003 +
1 domain prediction
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Lj0g3v0178109.1
n.a. cysteine proteinase [Lotus japonicus] gi|409190991|gb|AFV30165.1| chr0 86275384 86276573 +
1 domain prediction
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Lj0g3v0190229.1
n.a. PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Cicer arietinum] gi|502083377|ref|XP_004487440.1| chr0 93028113 93029167 -
1 domain prediction
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Lj0g3v0190239.1
n.a. PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like [Glycine max] gi|356543638|ref|XP_003540267.1| chr0 93032403 93038511 -
1 domain prediction
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Lj0g3v0193949.1
n.a. JHL18I08.3 protein [Theobroma cacao] gi|508722984|gb|EOY14881.1| chr0 94654629 94655529 -
1 domain prediction
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Lj0g3v0216769.1
n.a. PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L3-like [Cicer arietinum] gi|502152490|ref|XP_004508949.1| chr0 110145126 110155714 +
1 domain prediction
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Lj0g3v0231969.1
n.a. PREDICTED: KDEL-tailed cysteine endopeptidase CEP2-like [Cicer arietinum] gi|502143938|ref|XP_004505522.1| chr0 120379854 120381189 -
1 domain prediction
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Lj0g3v0242399.1
n.a. PREDICTED: ubiquitin carboxyl-terminal hydrolase 26-like [Glycine max] gi|356554385|ref|XP_003545527.1| chr0 125699546 125701351 -
1 domain prediction
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Lj0g3v0257279.1
n.a. RecName: Full=Papain; AltName: Full=Papaya proteinase I; Short=PPI; AltName: Allergen=Car p 1; Flags: Precursorgi|167391|gb|AAB02650.1| papain precursor [Carica papaya] gi|129614|sp|P00784.1|PAPA1_CARPA chr0 133559074 133560097 +
1 domain prediction
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Lj0g3v0257289.1
n.a. RecName: Full=Papain; AltName: Full=Papaya proteinase I; Short=PPI; AltName: Allergen=Car p 1; Flags: Precursorgi|167391|gb|AAB02650.1| papain precursor [Carica papaya] gi|129614|sp|P00784.1|PAPA1_CARPA chr0 133559074 133560197 +
1 domain prediction
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Lj0g3v0259509.1
n.a. PREDICTED: cysteine proteinase 15A [Glycine max] gi|356564325|ref|XP_003550405.1| chr0 134891666 134894781 +
1 domain prediction
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Lj0g3v0259509.2
n.a. PREDICTED: cysteine proteinase 15A [Glycine max] gi|356564325|ref|XP_003550405.1| chr0 134893168 134894781 +
1 domain prediction
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Lj0g3v0275839.1
n.a. n.a. chr0 143067779 143070809 +
1 domain prediction
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Lj0g3v0275859.1
n.a. PREDICTED: KDEL-tailed cysteine endopeptidase CEP2-like [Cicer arietinum] gi|502143938|ref|XP_004505522.1| chr0 143071113 143072335 -
1 domain prediction
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Lj0g3v0276819.1
n.a. PREDICTED: cysteine proteinase RD21a-like [Fragaria vesca subsp]. vesca] gi|470110251|ref|XP_004291399.1| chr0 143674375 143676123 +
1 domain prediction
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Lj0g3v0277439.1
n.a. PREDICTED: OTU domain-containing protein 3-like [Glycine max] gi|356565555|ref|XP_003551005.1| chr0 143985154 143992292 -
1 domain prediction
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Lj0g3v0277809.1
n.a. PREDICTED: OTU domain-containing protein DDB_G0284757-like isoform X4 [Cicer arietinum] gi|502092677|ref|XP_004489740.1| chr0 144221976 144232980 -
1 domain prediction
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Lj0g3v0287359.1
n.a. PREDICTED: ubiquitin-like-specific protease 1D-like isoform X5 [Cicer arietinum] gi|502154779|ref|XP_004509832.1| chr0 149306668 149317443 +
1 domain prediction
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Lj0g3v0287359.2
n.a. PREDICTED: ubiquitin-like-specific protease 1D-like isoform X5 [Cicer arietinum] gi|502154779|ref|XP_004509832.1| chr0 149312941 149317443 +
1 domain prediction
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Lj0g3v0287639.1
n.a. cysteine proteinase precursor [Glycine max] gi|351721126|ref|NP_001237199.1| chr0 149461775 149465973 +
1 domain prediction
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Lj0g3v0300649.1
n.a. cysteine proteinase [Lotus japonicus] gi|144905116|dbj|BAF56430.1| chr0 156238301 156238750 +
1 domain prediction
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Lj0g3v0300659.1
n.a. cysteine proteinase [Lotus japonicus] gi|144905116|dbj|BAF56430.1| chr0 156241215 156242388 +
1 domain prediction
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Lj0g3v0300989.1
n.a. Ubiquitin-like-specific protease [Medicago truncatula] gi|357439203|ref|XP_003589878.1| chr0 156446431 156448985 -
1 domain prediction
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Lj0g3v0301719.1
n.a. PREDICTED: OTU domain-containing protein 5-like isoform X4 [Cicer arietinum] gi|502083515|ref|XP_004487483.1| chr0 156844375 156851154 +
1 domain prediction
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Lj0g3v0303209.1
n.a. DNA-dependent RNA polymerase II largest subunit [Singapore grouper iridovirus] gi|56692741|ref|YP_164199.1| chr0 157783478 157786914 +
1 domain prediction
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Lj0g3v0311009.1
n.a. PREDICTED: ubiquitin carboxyl-terminal hydrolase 23-like [Glycine max] gi|356564905|ref|XP_003550687.1| chr0 162417143 162421786 -
1 domain prediction
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Lj0g3v0314599.1
n.a. papain-like cysteine proteinase-like protein 1 [Lotus japonicus] gi|33945877|emb|CAE45588.1| chr0 164219667 164220887 +
1 domain prediction
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Lj0g3v0319859.1
n.a. TNP2 [Medicago truncatula] gi|357517599|ref|XP_003629088.1| chr0 166949973 166950889 -
1 domain prediction
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Lj0g3v0330439.1
n.a. TNP2 [Medicago truncatula] gi|357517599|ref|XP_003629088.1| chr0 172683455 172684801 -
1 domain prediction
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Lj0g3v0338569.1
n.a. PREDICTED: ubiquitin carboxyl-terminal hydrolase 14-like [Glycine max] gi|356517211|ref|XP_003527282.1| chr0 177276636 177289116 +
1 domain prediction
 –