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Lj1g3v1664440.2

Overview

Field Value
Gene ID Lj1g3v1664440
Transcript ID Lj1g3v1664440.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: polyadenylate-binding protein 2-like [Glycine max] gi|356564176|ref|XP_003550332.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SMART
SM00360
1 63 63 2.90E-14
IPR000504
Pfam
PF00076
1 60 60 3.80E-20
IPR000504
Gene3D
G3DSA:3.30.70.330
1 72 72 8.80E-24
IPR012677
ProSiteProfiles
PS50102
1 67 67 16.705
IPR000504
PANTHER
PTHR24012:SF366
1 74 74 2.60E-125 –
PANTHER
PTHR24012
1 74 74 2.60E-125 –
CDD
cd12380
1 68 68 5.38E-35 –
SUPERFAMILY
SSF54928
1 71 71 5.51E-24
IPR012677
Coils
Coil
66 86 21 – –
Gene3D
G3DSA:3.30.70.330
83 175 93 1.40E-33
IPR012677
SUPERFAMILY
SSF54928
87 185 99 2.28E-30
IPR012677
PANTHER
PTHR24012
92 322 231 2.60E-125 –
CDD
cd12381
92 170 79 2.31E-49 –
PANTHER
PTHR24012:SF366
92 322 231 2.60E-125 –
ProSiteProfiles
PS50102
93 170 78 20.44
IPR000504
SMART
SM00360
94 166 73 3.10E-28
IPR000504
SMART
SM00361
94 166 73 0.0011
IPR003954
Pfam
PF00076
95 163 69 3.90E-22
IPR000504
SUPERFAMILY
SSF63570
266 401 136 1.22E-34
IPR002004
ProSiteProfiles
PS51309
311 388 78 19.459
IPR002004
Gene3D
G3DSA:1.10.1900.10
313 392 80 7.70E-30
IPR002004
Pfam
PF00658
317 383 67 3.50E-25
IPR002004
SMART
SM00517
323 386 64 1.20E-36
IPR002004

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj1g3v1664440.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v1664440.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.