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SM00361

Source: SMART

Description

No description is available for this domain.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

Associated Lotus transcripts 56

Transcript Name Description Predicted domains Domain count
Lj0g3v0004639.1
– Zinc finger C-x8-C-x5-C-x3-H type family protein [Theobroma cacao] gi|508786323|gb|EOY33579.1|
Domains
19
Lj0g3v0037639.1
– CCR4-NOT transcription complex subunit [Medicago truncatula] gi|357453719|ref|XP_003597140.1|
Domains
19
Lj0g3v0037639.2
– CCR4-NOT transcription complex subunit [Medicago truncatula] gi|357453719|ref|XP_003597140.1|
Domains
19
Lj0g3v0238669.1
– Poly(A)-binding protein [Medicago truncatula] gi|357465579|ref|XP_003603074.1|
Domains
17
Lj0g3v0342329.1
– PREDICTED: polyadenylate-binding protein 2-like [Glycine max] gi|356564176|ref|XP_003550332.1|
Domains
24
Lj1g3v1664440.1
– Poly(A)-binding protein [Daucus carota] gi|13560783|gb|AAK30205.1|AF349964_1
Domains
13
Lj1g3v1664440.2
– PREDICTED: polyadenylate-binding protein 2-like [Glycine max] gi|356564176|ref|XP_003550332.1|
Domains
20
Lj1g3v4515640.1
– PREDICTED: RNA-binding protein 28-like [Glycine max] gi|356546384|ref|XP_003541606.1|
Domains
17
Lj1g3v4691700.1
– PREDICTED: probable polyadenylate-binding protein At2g36660-like [Cicer arietinum] gi|502111603|ref|XP_004494108.1|
Domains
24
Lj1g3v4694450.1
– PREDICTED: splicing factor U2af small subunit B-like [Glycine max] gi|356505320|ref|XP_003521439.1|
Domains
17
Lj1g3v4717390.1
– RNA-binding protein [Medicago truncatula] gi|357511099|ref|XP_003625838.1|
Domains
14
Lj1g3v4717500.1
– PREDICTED: polyadenylate-binding protein, cytoplasmic and nuclear-like [Glycine max] gi|356503817|ref|XP_003520699.1|
Domains
12
Lj1g3v4717500.2
– PREDICTED: polyadenylate-binding protein, cytoplasmic and nuclear-like [Glycine max] gi|356503817|ref|XP_003520699.1|
Domains
14
Lj1g3v5060520.1
– PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Glycine max] gi|356573261|ref|XP_003554781.1|
Domains
14
Lj2g3v2925120.1
– PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic-like [Glycine max] gi|356521610|ref|XP_003529447.1|
Domains
17
Lj3g3v2993450.1
– PREDICTED: APOBEC1 complementation factor-like isoform 1 [Glycine max] gi|356542760|ref|XP_003539833.1|
Domains
14
Lj3g3v3097580.1
– CCR4-NOT transcription complex subunit [Medicago truncatula] gi|357472457|ref|XP_003606513.1|
Domains
18
Lj3g3v3097580.2
– CCR4-NOT transcription complex subunit [Medicago truncatula] gi|357472457|ref|XP_003606513.1|
Domains
19
Lj4g3v0620300.2
– Poly(A)-binding protein [Medicago truncatula] gi|357475273|ref|XP_003607922.1|
Domains
20
Lj4g3v0620300.3
– PREDICTED: polyadenylate-binding protein 2-like [Glycine max] gi|356499763|ref|XP_003518706.1|
Domains
21
Lj4g3v0668270.1
– DNA-damage-repair/toleration protein DRT111 [Medicago truncatula] gi|357475093|ref|XP_003607832.1|
Domains
18
Lj5g3v0616120.4
– CCR4-NOT transcription complex subunit [Medicago truncatula] gi|357472457|ref|XP_003606513.1|
Domains
18
Lj5g3v1889580.1
– PREDICTED: polyadenylate-binding protein 3-like isoform X2 [Cicer arietinum] gi|502118843|ref|XP_004496416.1|
Domains
26
LotjaGi1g1v0356800.1
– Polyadenylate-binding protein; TAIR: AT4G34110.1 poly(A) binding protein 2; Swiss-Prot: sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2; TrEMBL-Plants: tr|M5XRJ2|M5XRJ2_PRUPE Polyadenylate-binding protein; Found in the gene: LotjaGi1g1v0356800
Domains
27
LotjaGi1g1v0675400.1
– RNA-binding protein; TAIR: AT3G52660.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|O60506|HNRPQ_HUMAN Heterogeneous nuclear ribonucleoprotein Q; TrEMBL-Plants: tr|A0A151TVP5|A0A151TVP5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0675400
Domains
15
LotjaGi1g1v0675400.2
– RNA-binding protein; TAIR: AT3G52660.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|O60506|HNRPQ_HUMAN Heterogeneous nuclear ribonucleoprotein Q; TrEMBL-Plants: tr|A0A151TVP5|A0A151TVP5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0675400
Domains
15
LotjaGi1g1v0680100.1
– Splicing factor U2af small subunit A-like protein; TAIR: AT5G42820.1 Zinc finger C-x8-C-x5-C-x3-H type family protein; Swiss-Prot: sp|Q9FMY5|U2AFB_ARATH Splicing factor U2af small subunit B; TrEMBL-Plants: tr|I3SLP5|I3SLP5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0680100
Domains
18
LotjaGi1g1v0682900.1
– Polyadenylate-binding protein; TAIR: AT2G36660.1 poly(A) binding protein 7; Swiss-Prot: sp|Q9ZQA8|PABP7_ARATH Polyadenylate-binding protein 7; TrEMBL-Plants: tr|G7L4Y5|G7L4Y5_MEDTR Polyadenylate-binding protein; Found in the gene: LotjaGi1g1v0682900
Domains
26
LotjaGi1g1v0706700.1
– RNA-binding family protein, putative; TAIR: AT2G21440.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q8CGC6|RBM28_MOUSE RNA-binding protein 28; TrEMBL-Plants: tr|A0A0B2RX89|A0A0B2RX89_GLYSO RNA-binding protein 28; Found in the gene: LotjaGi1g1v0706700
Domains
18
LotjaGi1g1v0706700.2
– RNA-binding family protein, putative; TAIR: AT2G21440.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q8CGC6|RBM28_MOUSE RNA-binding protein 28; TrEMBL-Plants: tr|A0A0B2RX89|A0A0B2RX89_GLYSO RNA-binding protein 28; Found in the gene: LotjaGi1g1v0706700
Domains
18
LotjaGi1g1v0729000.1
– RNA binding protein; TAIR: AT4G19610.1 nucleotide/nucleic acid binding protein; Swiss-Prot: sp|Q5AJS6|MRD1_CANAL Multiple RNA-binding domain-containing protein 1; TrEMBL-Plants: tr|A0A0B2S452|A0A0B2S452_GLYSO Multiple RNA-binding domain-containing protein 1; Found in the gene: LotjaGi1g1v0729000
Domains
19
LotjaGi1g1v0729200.1
– RNA binding protein; TAIR: AT4G19610.1 nucleotide/nucleic acid binding protein; Swiss-Prot: sp|Q5AJS6|MRD1_CANAL Multiple RNA-binding domain-containing protein 1; TrEMBL-Plants: tr|A0A0B2S452|A0A0B2S452_GLYSO Multiple RNA-binding domain-containing protein 1; Found in the gene: LotjaGi1g1v0729200
Domains
19
LotjaGi1g1v0796100.1
– RNA-binding protein; TAIR: AT4G00830.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|O60506|HNRPQ_HUMAN Heterogeneous nuclear ribonucleoprotein Q; TrEMBL-Plants: tr|I1NCQ2|I1NCQ2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0796100
Domains
15
LotjaGi1g1v0796100.2
– RNA-binding protein; TAIR: AT4G00830.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|O60506|HNRPQ_HUMAN Heterogeneous nuclear ribonucleoprotein Q; TrEMBL-Plants: tr|I1NCQ2|I1NCQ2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0796100
Domains
15
LotjaGi2g1v0011500.1
– Splicing factor U2af small subunit A; TAIR: AT5G42820.1 Zinc finger C-x8-C-x5-C-x3-H type family protein; Swiss-Prot: sp|Q9FMY5|U2AFB_ARATH Splicing factor U2af small subunit B; TrEMBL-Plants: tr|A0A1D1Z0R2|A0A1D1Z0R2_9ARAE Splicing factor U2af small subunit A; Found in the gene: LotjaGi2g1v0011500
Domains
20
LotjaGi2g1v0011500.2
– Splicing factor U2af small subunit A; TAIR: AT5G42820.1 Zinc finger C-x8-C-x5-C-x3-H type family protein; Swiss-Prot: sp|Q9FMY5|U2AFB_ARATH Splicing factor U2af small subunit B; TrEMBL-Plants: tr|A0A1D1Z0R2|A0A1D1Z0R2_9ARAE Splicing factor U2af small subunit A; Found in the gene: LotjaGi2g1v0011500
Domains
20
LotjaGi2g1v0183800.1
– RNA binding protein; TAIR: AT1G73530.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q9LIN3|RZ1A_ARATH Glycine-rich RNA-binding protein RZ1A; TrEMBL-Plants: tr|I3SK86|I3SK86_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0183800
Domains
19
LotjaGi2g1v0365000.1
– CCR4-NOT transcription complex subunit 4; TAIR: AT3G45630.1 RNA binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|O95628|CNOT4_HUMAN CCR4-NOT transcription complex subunit 4; TrEMBL-Plants: tr|A0A151TN31|A0A151TN31_CAJCA CCR4-NOT transcription complex subunit 4; Found in the gene: LotjaGi2g1v0365000
Domains
24
LotjaGi3g1v0172600.1
– Splicing factor U2af small subunit A; TAIR: AT5G42820.1 Zinc finger C-x8-C-x5-C-x3-H type family protein; Swiss-Prot: sp|Q9ZQW8|U2AFA_ORYSJ Splicing factor U2af small subunit A; TrEMBL-Plants: tr|A0A1J7IB44|A0A1J7IB44_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0172600
Domains
20
LotjaGi3g1v0270600.1
– CCR4-NOT transcription complex subunit 4; TAIR: AT5G60170.2 RNA binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|O95628|CNOT4_HUMAN CCR4-NOT transcription complex subunit 4; TrEMBL-Plants: tr|A0A0R0FWC0|A0A0R0FWC0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0270600
Domains
25
LotjaGi3g1v0270600.2
– CCR4-NOT transcription complex subunit 4; TAIR: AT3G45630.1 RNA binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|O95628|CNOT4_HUMAN CCR4-NOT transcription complex subunit 4; TrEMBL-Plants: tr|K7M9K7|K7M9K7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0270600
Domains
24
LotjaGi3g1v0476700.1
– RNA-binding protein; TAIR: AT3G52660.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|O60506|HNRPQ_HUMAN Heterogeneous nuclear ribonucleoprotein Q; TrEMBL-Plants: tr|A0A151TNT3|A0A151TNT3_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0476700
Domains
15
LotjaGi3g1v0476700.2
– RNA-binding protein; TAIR: AT3G52660.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|O60506|HNRPQ_HUMAN Heterogeneous nuclear ribonucleoprotein Q; TrEMBL-Plants: tr|A0A151TNT3|A0A151TNT3_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0476700
Domains
15
LotjaGi3g1v0476700.3
– RNA-binding protein; TAIR: AT3G52660.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|O60506|HNRPQ_HUMAN Heterogeneous nuclear ribonucleoprotein Q; TrEMBL-Plants: tr|A0A151TNT3|A0A151TNT3_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0476700
Domains
15
LotjaGi3g1v0476700.4
– RNA-binding protein; TAIR: AT3G52660.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|O60506|HNRPQ_HUMAN Heterogeneous nuclear ribonucleoprotein Q; TrEMBL-Plants: tr|A0A151TNT3|A0A151TNT3_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0476700
Domains
15
LotjaGi4g1v0076900.1
– Polyadenylate-binding protein; TAIR: AT1G49760.1 poly(A) binding protein 8; Swiss-Prot: sp|Q9FXA2|PABP8_ARATH Polyadenylate-binding protein 8; TrEMBL-Plants: tr|I1JE12|I1JE12_SOYBN Polyadenylate-binding protein; Found in the gene: LotjaGi4g1v0076900
Domains
27
LotjaGi4g1v0086400.1
– Splicing factor; TAIR: AT1G30480.1 D111/G-patch domain-containing protein; Swiss-Prot: sp|P42698|DR111_ARATH DNA-damage-repair/toleration protein DRT111, chloroplastic; TrEMBL-Plants: tr|V7CI72|V7CI72_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0086400
Domains
19
LotjaGi4g1v0254900_LC.1
– RNA-binding protein; TAIR: AT5G61030.1 glycine-rich RNA-binding protein 3; Swiss-Prot: sp|Q9FNR1|RBG3_ARATH Glycine-rich RNA-binding protein 3, mitochondrial; TrEMBL-Plants: tr|A0A0B2QAS8|A0A0B2QAS8_GLYSO Glycine-rich RNA-binding protein 2, mitochondrial; Found in the gene: LotjaGi4g1v0254900_LC
Domains
14
LotjaGi5g1v0027000.1
– Polyadenylate-binding protein; TAIR: AT1G49760.1 poly(A) binding protein 8; Swiss-Prot: sp|Q9FXA2|PABP8_ARATH Polyadenylate-binding protein 8; TrEMBL-Plants: tr|A0A0B2PYJ0|A0A0B2PYJ0_GLYSO Polyadenylate-binding protein; Found in the gene: LotjaGi5g1v0027000
Domains
26
LotjaGi5g1v0073600.1
– CCR4-NOT transcription complex subunit 4; TAIR: AT3G45630.1 RNA binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|O95628|CNOT4_HUMAN CCR4-NOT transcription complex subunit 4; TrEMBL-Plants: tr|K7LHH2|K7LHH2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0073600
Domains
24
LotjaGi5g1v0073600.2
– CCR4-NOT transcription complex subunit 4; TAIR: AT3G45630.1 RNA binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|O95628|CNOT4_HUMAN CCR4-NOT transcription complex subunit 4; TrEMBL-Plants: tr|K7LHH2|K7LHH2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0073600
Domains
24
LotjaGi5g1v0073600.3
– CCR4-NOT transcription complex subunit 4; TAIR: AT3G45630.1 RNA binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|O95628|CNOT4_HUMAN CCR4-NOT transcription complex subunit 4; TrEMBL-Plants: tr|K7LHH2|K7LHH2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0073600
Domains
24
LotjaGi5g1v0073600.4
– CCR4-NOT transcription complex subunit 4; TAIR: AT3G45630.1 RNA binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|O95628|CNOT4_HUMAN CCR4-NOT transcription complex subunit 4; TrEMBL-Plants: tr|K7LHH2|K7LHH2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0073600
Domains
24
LotjaGi5g1v0106500.1
– RNA-binding protein; TAIR: AT3G52380.1 chloroplast RNA-binding protein 33; Swiss-Prot: sp|Q39061|CP33_ARATH RNA-binding protein CP33, chloroplastic; TrEMBL-Plants: tr|K7LI32|K7LI32_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0106500
Domains
14
LotjaGi5g1v0106500.2
– RNA-binding protein; TAIR: AT3G52380.1 chloroplast RNA-binding protein 33; Swiss-Prot: sp|Q39061|CP33_ARATH RNA-binding protein CP33, chloroplastic; TrEMBL-Plants: tr|K7LI32|K7LI32_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0106500
Domains
14
LotjaGi5g1v0285400.1
– Polyadenylate-binding protein; TAIR: AT1G71770.1 poly(A)-binding protein 5; Swiss-Prot: sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5; TrEMBL-Plants: tr|I1NH63|I1NH63_SOYBN Polyadenylate-binding protein; Found in the gene: LotjaGi5g1v0285400
Domains
26

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 1.79