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Lj1g3v1698910.1

Overview

Field Value
Gene ID Lj1g3v1698910
Transcript ID Lj1g3v1698910.1
Lotus japonicus genome version MG20 v3.0
Description Cyclin A3,1 [Theobroma cacao] gi|508723904|gb|EOY15801.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF
PIRSF001771
1 340 340 1.20E-102 –
MobiDBLite
mobidb-lite
1 20 20 – –
Phobius
CYTOPLASMIC_DOMAIN
1 246 246 – –
PANTHER
PTHR10177:SF100
2 341 340 5.90E-174
IPR029507
PANTHER
PTHR10177
2 341 340 5.90E-174 –
MobiDBLite
mobidb-lite
32 53 22 – –
SUPERFAMILY
SSF47954
78 208 131 2.17E-44
IPR013763
Pfam
PF00134
80 208 129 5.60E-39
IPR006671
Gene3D
G3DSA:1.10.472.10
99 202 104 6.90E-43
IPR013763
CDD
cd00043
112 201 90 1.41E-18 –
ProSitePatterns
PS00292
113 144 32 –
IPR006671
SMART
SM00385
118 202 85 6.00E-21
IPR013763
Gene3D
G3DSA:1.10.472.10
203 332 130 2.00E-41
IPR013763
SUPERFAMILY
SSF47954
211 331 121 1.81E-34
IPR013763
CDD
cd00043
211 297 87 1.92E-14 –
Pfam
PF02984
211 328 118 6.30E-31
IPR004367
SMART
SM01332
211 329 119 6.70E-32
IPR004367
SMART
SM00385
215 298 84 3.70E-15
IPR013763
Phobius
TRANSMEMBRANE
247 268 22 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
269 341 73 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0042025
Cellular component Host cell nucleus A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Subterm of

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj1g3v1698910.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v1698910.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.