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Lj1g3v1720220.1

Overview

Field	Value
Gene ID	Lj1g3v1720220
Transcript ID	Lj1g3v1720220.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: activating signal cointegrator 1 complex subunit 2-like [Cicer arietinum] gi\|502132779\|ref\|XP_004501524.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	64	64	–	–
PANTHER	PTHR21494:SF0 View details on PTHR21494:SF0 Search for proteins/transripts with this domain View external data on PTHR21494:SF0	9	852	844	6.40E-204	–
PANTHER	PTHR21494 View details on PTHR21494 Search for proteins/transripts with this domain View external data on PTHR21494	9	852	844	6.40E-204	–
SMART	SM00546 View details on SM00546 Search for proteins/transripts with this domain View external data on SM00546	502	544	43	7.50E-09	IPR003892 Show description in modal box View details on IPR003892 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51140 View details on PS51140 Search for proteins/transripts with this domain View external data on PS51140	502	545	44	14.964	IPR003892 Show description in modal box View details on IPR003892 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF46934 View details on SSF46934 Search for proteins/transripts with this domain View external data on SSF46934	502	559	58	4.46E-17	IPR009060 Show description in modal box View details on IPR009060 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd14364 View details on cd14364 Search for proteins/transripts with this domain View external data on cd14364	504	543	40	1.32E-16	–
Pfam	PF02845 View details on PF02845 Search for proteins/transripts with this domain View external data on PF02845	504	543	40	1.80E-08	IPR003892 Show description in modal box View details on IPR003892 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	682	704	23	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	761	852	92	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005515 View details of GO:0005515 AmiGO InterPro QuickGO	Molecular function	Protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).	Subterm of View details of GO:0005488

Genome browser

LORE1 insertions 28

Expression data

Expression pattern

Expression pattern of Lj1g3v1720220.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v1720220.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.