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Lj1g3v1732330.1

Overview

Field Value
Gene ID Lj1g3v1732330
Transcript ID Lj1g3v1732330.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: pollen-specific protein SF3-like [Cicer arietinum] gi|502132761|ref|XP_004501516.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24206:SF35
1 161 161 1.40E-121 –
PANTHER
PTHR24206
1 161 161 1.40E-121 –
SUPERFAMILY
SSF57716
3 35 33 1.56E-09 –
Gene3D
G3DSA:2.10.110.10
3 70 68 1.80E-23
IPR001781
ProSiteProfiles
PS50023
8 68 61 12.761
IPR001781
SMART
SM00132
9 61 53 2.00E-10
IPR001781
ProSitePatterns
PS00478
10 44 35 –
IPR001781
Pfam
PF00412
10 63 54 2.20E-09
IPR001781
SUPERFAMILY
SSF57716
36 76 41 4.94E-14 –
SUPERFAMILY
SSF57716
100 132 33 2.54E-09 –
Gene3D
G3DSA:2.10.110.10
102 161 60 1.50E-18
IPR001781
ProSiteProfiles
PS50023
105 161 57 11.563
IPR001781
SMART
SM00132
106 158 53 4.70E-12
IPR001781
Pfam
PF00412
107 160 54 2.10E-10
IPR001781
SUPERFAMILY
SSF57716
133 161 29 1.96E-07 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 10

Expression data

Expression pattern

Expression pattern of Lj1g3v1732330.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v1732330.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.