Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001781
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 38 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.757s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0253829.1
n.a. PREDICTED: pollen-specific protein SF3-like isoform X1 [Cicer arietinum] gi|502137895|ref|XP_004503222.1| chr0 131698154 131701447 -
6 domain predictions
 –
Lj0g3v0318729.1
n.a. PREDICTED: LOW QUALITY PROTEIN: pollen-specific protein SF3-like [Glycine max] gi|356506272|ref|XP_003521910.1| chr0 166476717 166477355 -
5 domain predictions
 –
Lj0g3v0329179.1
n.a. LIM and UIM domain-containing [Medicago truncatula] gi|357461021|ref|XP_003600792.1| chr0 172091698 172096758 -
6 domain predictions
 –
Lj1g3v1732330.1
n.a. PREDICTED: pollen-specific protein SF3-like [Cicer arietinum] gi|502132761|ref|XP_004501516.1| chr1 20347629 20351231 +
6 domain predictions
 –
Lj2g3v1828370.1
n.a. PREDICTED: protein DA1-related 1-like isoform 1 [Glycine max] gi|356496814|ref|XP_003517260.1| chr2 27412166 27418801 -
6 domain predictions
 –
Lj2g3v2661480.1
n.a. LIM and UIM domain-containing [Medicago truncatula] gi|357492437|ref|XP_003616507.1| chr2 35855315 35860767 +
6 domain predictions
 –
Lj4g3v0911400.1
n.a. PREDICTED: protein DA1-related 1-like isoform X1 [Cicer arietinum] gi|502153131|ref|XP_004509228.1| chr4 13575774 13582226 +
3 domain predictions
 –
Lj4g3v0914500.2
n.a. PREDICTED: protein DA1-related 1-like isoform X1 [Cicer arietinum] gi|502153131|ref|XP_004509228.1| chr4 13621065 13627517 -
3 domain predictions
 –
Lj4g3v1539370.1
n.a. PREDICTED: pollen-specific protein SF3-like [Glycine max] gi|356513577|ref|XP_003525489.1| chr4 23132208 23133880 -
6 domain predictions
 –
Lj4g3v1539370.2
n.a. PREDICTED: pollen-specific protein SF3-like [Glycine max] gi|356513577|ref|XP_003525489.1| chr4 23132208 23133880 -
6 domain predictions
 –
Lj5g3v0083000.1
n.a. PREDICTED: protein DA1-like isoform X1 [Cicer arietinum] gi|502125921|ref|XP_004499115.1| chr5 461619 469718 +
6 domain predictions
 –
Lj5g3v0310290.1
n.a. PREDICTED: pollen-specific protein SF3-like [Cicer arietinum] gi|502125605|ref|XP_004498991.1| chr5 3156655 3167658 +
6 domain predictions
 –
LotjaGi1g1v0085900.1
n.a. Protein DA1-related 1; TAIR: AT2G39830.1 DA1-related protein 2; Swiss-Prot: sp|Q0WSN2|DAR2_ARATH Protein DA1-related 2; TrEMBL-Plants: tr|V7B7H4|V7B7H4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0085900 LjG1.1_chr1 12431632 12440031 -
5 domain predictions
 –
LotjaGi1g1v0085900.2
n.a. Protein DA1-related 1; TAIR: AT2G39830.1 DA1-related protein 2; Swiss-Prot: sp|Q0WSN2|DAR2_ARATH Protein DA1-related 2; TrEMBL-Plants: tr|K7KAN7|K7KAN7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0085900 LjG1.1_chr1 12434842 12439100 -
5 domain predictions
 –
LotjaGi1g1v0085900.3
n.a. Protein DA1-related 1; TAIR: AT2G39830.1 DA1-related protein 2; Swiss-Prot: sp|Q0WSN2|DAR2_ARATH Protein DA1-related 2; TrEMBL-Plants: tr|A0A0S3RKQ0|A0A0S3RKQ0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0085900 LjG1.1_chr1 12434873 12438851 -
5 domain predictions
 –
LotjaGi1g1v0085900.4
n.a. Protein DA1-related 1; TAIR: AT2G39830.1 DA1-related protein 2; Swiss-Prot: sp|Q0WSN2|DAR2_ARATH Protein DA1-related 2; TrEMBL-Plants: tr|A0A0S3RKQ0|A0A0S3RKQ0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0085900 LjG1.1_chr1 12434873 12438997 -
5 domain predictions
 –
LotjaGi1g1v0361800.1
n.a. LIM domain protein; TAIR: AT1G10200.1 GATA type zinc finger transcription factor family protein; Swiss-Prot: sp|Q94JX5|WLIM1_ARATH LIM domain-containing protein WLIM1; TrEMBL-Plants: tr|A0A151TTL1|A0A151TTL1_CAJCA Pollen-specific protein SF3; Found in the gene: LotjaGi1g1v0361800 LjG1.1_chr1 83648730 83650374 +
5 domain predictions
 –
LotjaGi1g1v0472900.1
n.a. LIM domain-containing family protein; TAIR: AT1G01780.1 GATA type zinc finger transcription factor family protein; Swiss-Prot: sp|Q1ECF5|PLI2B_ARATH LIM domain-containing protein PLIM2b; TrEMBL-Plants: tr|G7L3J0|G7L3J0_MEDTR GATA type zinc finger transcription factor family protein; Found in the gene: LotjaGi1g1v0472900 LjG1.1_chr1 98343517 98346706 -
5 domain predictions
 –
LotjaGi2g1v0395000.1
n.a. Protein DA1-related 1; TAIR: AT4G36860.1 LIM domain-containing protein; Swiss-Prot: sp|Q8W4F0|DAR1_ARATH Protein DA1-related 1; TrEMBL-Plants: tr|A0A0B2RSU7|A0A0B2RSU7_GLYSO DA-related 1 protein 1; Found in the gene: LotjaGi2g1v0395000 LjG1.1_chr2 89256379 89263288 -
5 domain predictions
 –
LotjaGi2g1v0395000.3
n.a. Protein DA1-related 1; TAIR: AT4G36860.1 LIM domain-containing protein; Swiss-Prot: sp|Q8W4F0|DAR1_ARATH Protein DA1-related 1; TrEMBL-Plants: tr|A0A0G2UMG5|A0A0G2UMG5_GLYSO DA-related 1 protein 4; Found in the gene: LotjaGi2g1v0395000 LjG1.1_chr2 89256784 89262059 -
2 domain predictions
 –
LotjaGi2g1v0395000.4
n.a. Protein DA1-related 1; TAIR: AT4G36860.1 LIM domain-containing protein; Swiss-Prot: sp|Q8W4F0|DAR1_ARATH Protein DA1-related 1; TrEMBL-Plants: tr|A0A0G2UMG5|A0A0G2UMG5_GLYSO DA-related 1 protein 4; Found in the gene: LotjaGi2g1v0395000 LjG1.1_chr2 89256784 89262269 -
2 domain predictions
 –
LotjaGi3g1v0380400.1
n.a. LIM domain-containing family protein; TAIR: AT3G61230.1 GATA type zinc finger transcription factor family protein; Swiss-Prot: sp|Q500W4|PLI2C_ARATH LIM domain-containing protein PLIM2c; TrEMBL-Plants: tr|I3RZ79|I3RZ79_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0380400 LjG1.1_chr3 77305690 77307982 -
5 domain predictions
 –
LotjaGi4g1v0114100.1
n.a. Protein DA1-related 1; TAIR: AT4G36860.1 LIM domain-containing protein; Swiss-Prot: sp|Q8W4F0|DAR1_ARATH Protein DA1-related 1; TrEMBL-Plants: tr|K7K6P3|K7K6P3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0114100 LjG1.1_chr4 16504627 16511792 +
5 domain predictions
 –
LotjaGi4g1v0238400.1
n.a. LIM domain protein; TAIR: AT1G10200.1 GATA type zinc finger transcription factor family protein; Swiss-Prot: sp|Q94JX5|WLIM1_ARATH LIM domain-containing protein WLIM1; TrEMBL-Plants: tr|I1JZX3|I1JZX3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0238400 LjG1.1_chr4 55428160 55429865 +
5 domain predictions
 –
LotjaGi5g1v0019700.1
n.a. Protein DA1-related 1; TAIR: AT1G19270.1 DA1; Swiss-Prot: sp|P0C7Q8|DA1_ARATH Protein DA1; TrEMBL-Plants: tr|A0A151RWT7|A0A151RWT7_CAJCA LIM and UIM domain-containing family; Found in the gene: LotjaGi5g1v0019700 LjG1.1_chr5 3724701 3735033 -
5 domain predictions
 –
LotjaGi5g1v0019700.2
n.a. Protein DA1-related 1; TAIR: AT1G19270.1 DA1; Swiss-Prot: sp|P0C7Q8|DA1_ARATH Protein DA1; TrEMBL-Plants: tr|A0A0L9TTM7|A0A0L9TTM7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0019700 LjG1.1_chr5 3725807 3733969 -
5 domain predictions
 –
LotjaGi5g1v0019700.3
n.a. Protein DA1-related 1; TAIR: AT1G19270.1 DA1; Swiss-Prot: sp|P0C7Q8|DA1_ARATH Protein DA1; TrEMBL-Plants: tr|A0A151RWT7|A0A151RWT7_CAJCA LIM and UIM domain-containing family; Found in the gene: LotjaGi5g1v0019700 LjG1.1_chr5 3725807 3733969 -
5 domain predictions
 –
LotjaGi5g1v0033800.1
n.a. LIM domain protein; TAIR: AT1G10200.1 GATA type zinc finger transcription factor family protein; Swiss-Prot: sp|Q94JX5|WLIM1_ARATH LIM domain-containing protein WLIM1; TrEMBL-Plants: tr|I3SQF3|I3SQF3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0033800 LjG1.1_chr5 5506793 5509579 +
5 domain predictions
 –
LotjaGi5g1v0321800.1
n.a. LIM domain protein; TAIR: AT1G10200.1 GATA type zinc finger transcription factor family protein; Swiss-Prot: sp|Q94JX5|WLIM1_ARATH LIM domain-containing protein WLIM1; TrEMBL-Plants: tr|A0A151U7K2|A0A151U7K2_CAJCA Pollen-specific protein SF3; Found in the gene: LotjaGi5g1v0321800 LjG1.1_chr5 64054994 64056610 -
5 domain predictions
 –
LotjaGi5g1v0321800.2
n.a. LIM domain protein; TAIR: AT1G10200.1 GATA type zinc finger transcription factor family protein; Swiss-Prot: sp|Q94JX5|WLIM1_ARATH LIM domain-containing protein WLIM1; TrEMBL-Plants: tr|A0A151U7K2|A0A151U7K2_CAJCA Pollen-specific protein SF3; Found in the gene: LotjaGi5g1v0321800 LjG1.1_chr5 64055148 64056610 -
5 domain predictions
 –
LotjaGi6g1v0066100.2
n.a. Protein DA1-related 1; TAIR: AT2G39830.1 DA1-related protein 2; Swiss-Prot: sp|Q0WSN2|DAR2_ARATH Protein DA1-related 2; TrEMBL-Plants: tr|G7JA19|G7JA19_MEDTR Zinc ion-binding protein; Found in the gene: LotjaGi6g1v0066100 LjG1.1_chr6 12556780 12567797 -
5 domain predictions
 –
LotjaGi6g1v0066100.3
n.a. Protein DA1-related 1; TAIR: AT2G39830.1 DA1-related protein 2; Swiss-Prot: sp|Q0WSN2|DAR2_ARATH Protein DA1-related 2; TrEMBL-Plants: tr|G7JA19|G7JA19_MEDTR Zinc ion-binding protein; Found in the gene: LotjaGi6g1v0066100 LjG1.1_chr6 12556780 12567797 -
5 domain predictions
 –
LotjaGi6g1v0066100.4
n.a. Protein DA1-related 1; TAIR: AT2G39830.1 DA1-related protein 2; Swiss-Prot: sp|Q0WSN2|DAR2_ARATH Protein DA1-related 2; TrEMBL-Plants: tr|G7JA19|G7JA19_MEDTR Zinc ion-binding protein; Found in the gene: LotjaGi6g1v0066100 LjG1.1_chr6 12556780 12567797 -
5 domain predictions
 –
LotjaGi6g1v0066100.5
n.a. Protein DA1-related 1; TAIR: AT2G39830.1 DA1-related protein 2; Swiss-Prot: sp|Q0WSN2|DAR2_ARATH Protein DA1-related 2; TrEMBL-Plants: tr|G7JA19|G7JA19_MEDTR Zinc ion-binding protein; Found in the gene: LotjaGi6g1v0066100 LjG1.1_chr6 12562080 12567691 -
5 domain predictions
 –
LotjaGi6g1v0069600.1
n.a. LIM domain-containing family protein; TAIR: AT3G55770.1 GATA type zinc finger transcription factor family protein; Swiss-Prot: sp|Q9M047|WLI2B_ARATH LIM domain-containing protein WLIM2b; TrEMBL-Plants: tr|I3T8A1|I3T8A1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0069600 LjG1.1_chr6 13309666 13313513 -
5 domain predictions
 –
LotjaGi6g1v0069600.2
n.a. LIM domain-containing family protein; TAIR: AT3G55770.1 GATA type zinc finger transcription factor family protein; Swiss-Prot: sp|Q9M047|WLI2B_ARATH LIM domain-containing protein WLIM2b; TrEMBL-Plants: tr|I3T8A1|I3T8A1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0069600 LjG1.1_chr6 13309934 13313562 -
5 domain predictions
 –
LotjaGi6g1v0069600.3
n.a. LIM domain-containing family protein; TAIR: AT3G55770.1 GATA type zinc finger transcription factor family protein; Swiss-Prot: sp|Q9M047|WLI2B_ARATH LIM domain-containing protein WLIM2b; TrEMBL-Plants: tr|I3T8A1|I3T8A1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0069600 LjG1.1_chr6 13310108 13313051 -
5 domain predictions
 –
LotjaGi6g1v0069600.4
n.a. LIM domain-containing family protein; TAIR: AT3G55770.1 GATA type zinc finger transcription factor family protein; Swiss-Prot: sp|Q9M047|WLI2B_ARATH LIM domain-containing protein WLIM2b; TrEMBL-Plants: tr|I3T8A1|I3T8A1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0069600 LjG1.1_chr6 13310182 13313051 -
5 domain predictions
 –