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Lj1g3v1798550.1

Overview

Field Value
Gene ID Lj1g3v1798550
Transcript ID Lj1g3v1798550.1
Lotus japonicus genome version MG20 v3.0
Description Ethylene-responsive transcription factor RAP2-9 [Medicago truncatula] gi|357465925|ref|XP_003603247.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31985
6 144 139 1.20E-70 –
PANTHER
PTHR31985:SF34
6 144 139 1.20E-70 –
CDD
cd00018
10 70 61 1.31E-26
IPR001471
ProSiteProfiles
PS51032
11 68 58 21.391
IPR001471
Gene3D
G3DSA:3.30.730.10
11 69 59 1.40E-27
IPR001471
SMART
SM00380
11 74 64 1.80E-28
IPR001471
SUPERFAMILY
SSF54171
11 69 59 1.18E-19
IPR016177
Pfam
PF00847
12 58 47 2.00E-09
IPR001471
PRINTS
PR00367
12 23 12 6.00E-09
IPR001471
PRINTS
PR00367
34 50 17 6.00E-09
IPR001471
PANTHER
PTHR31985:SF34
183 237 55 1.20E-70 –
PANTHER
PTHR31985
183 237 55 1.20E-70 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj1g3v1798550.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v1798550.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.