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Lj1g3v2068670.1

Overview

Field	Value
Gene ID	Lj1g3v2068670
Transcript ID	Lj1g3v2068670.1
Lotus japonicus genome version	MG20 v3.0
Description	Mitogen-activated protein kinase kinase kinase [Medicago truncatula] gi\|357466667\|ref\|XP_003603618.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR21540:SF1 View details on PTHR21540:SF1 Search for proteins/transripts with this domain View external data on PTHR21540:SF1	1	150	150	1.50E-55	–
PANTHER	PTHR21540 View details on PTHR21540 Search for proteins/transripts with this domain View external data on PTHR21540	1	150	150	1.50E-55	–
ProSiteProfiles	PS50966 View details on PS50966 Search for proteins/transripts with this domain View external data on PS50966	50	80	31	10.126	IPR007527 Show description in modal box View details on IPR007527 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF04434 View details on PF04434 Search for proteins/transripts with this domain View external data on PF04434	50	78	29	0.0012	IPR007527 Show description in modal box View details on IPR007527 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	163	184	22	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0008270 View details of GO:0008270 AmiGO InterPro QuickGO	Molecular function	Zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.	Subterm of View details of GO:0046914

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj1g3v2068670.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v2068670.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.