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| Field | Value |
|---|---|
| Gene ID | Lj1g3v2139400 |
| Transcript ID | Lj1g3v2139400.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: protein WALLS ARE THIN 1-like [Cicer arietinum] gi|502161228|ref|XP_004512084.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 105 | 105 | 1.40E-57 | ||
| Phobius | 1 | 11 | 11 | – | – | |
| PANTHER | 1 | 105 | 105 | 1.40E-57 | – | |
| Pfam | 9 | 102 | 94 | 3.30E-11 | ||
| TMHMM | 12 | 34 | 23 | – | – | |
| Phobius | 12 | 34 | 23 | – | – | |
| SUPERFAMILY | 22 | 100 | 79 | 2.62E-07 | – | |
| Phobius | 35 | 48 | 14 | – | – | |
| Phobius | 49 | 70 | 22 | – | – | |
| TMHMM | 49 | 71 | 23 | – | – | |
| Phobius | 71 | 76 | 6 | – | – | |
| TMHMM | 76 | 98 | 23 | – | – | |
| Phobius | 77 | 98 | 22 | – | – | |
| Phobius | 99 | 105 | 7 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. |
Expression pattern of Lj1g3v2139400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v2139400.1, powered by CORGI.
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