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Lj1g3v2216450.1

Overview

Field Value
Gene ID Lj1g3v2216450
Transcript ID Lj1g3v2216450.1
Lotus japonicus genome version MG20 v3.0
Description bZIP transcription factor bZIP46 [Glycine max] gi|351721722|ref|NP_001236963.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR22952:SF95
1 153 153 6.60E-24 –
MobiDBLite
mobidb-lite
1 25 25 – –
PANTHER
PTHR22952
1 153 153 6.60E-24 –
SMART
SM00338
94 158 65 2.80E-10
IPR004827
ProSiteProfiles
PS50217
96 153 58 10.588
IPR004827
Gene3D
G3DSA:1.20.5.170
96 149 54 1.70E-11 –
Pfam
PF00170
97 145 49 2.30E-11
IPR004827
CDD
cd14707
98 139 42 2.94E-15 –
SUPERFAMILY
SSF57959
99 144 46 7.50E-10 –
Coils
Coil
121 148 28 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj1g3v2216450.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v2216450.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.