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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PTHR22952
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 99 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 0.044s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0017149.1
n.a. TGA-type basic leucine zipper protein TGA1.1 [Phaseolus vulgaris] gi|15148922|gb|AAK84888.1|AF402607_1 chr0 6653761 6655795 +
1 domain prediction
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Lj0g3v0017169.1
n.a. PREDICTED: transcription factor TGA1-like isoform X3 [Cicer arietinum] gi|502135814|ref|XP_004502462.1| chr0 6655960 6657047 +
1 domain prediction
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Lj0g3v0063499.1
n.a. PREDICTED: transcription factor HBP-1b(c1)-like [Glycine max] gi|356500467|ref|XP_003519053.1| chr0 21600064 21600689 +
1 domain prediction
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Lj0g3v0077279.1
n.a. PREDICTED: transcription factor HBP-1b(c1)-like [Glycine max] gi|356499701|ref|XP_003518675.1| chr0 29590502 29596699 +
1 domain prediction
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Lj0g3v0077279.2
n.a. PREDICTED: transcription factor HBP-1b(c1)-like [Glycine max] gi|356499701|ref|XP_003518675.1| chr0 29590502 29596699 +
1 domain prediction
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Lj0g3v0087799.1
n.a. TGA-type basic leucine zipper protein TGA2.1 [Phaseolus vulgaris] gi|15148924|gb|AAK84889.1|AF402608_1 chr0 35772583 35781135 +
1 domain prediction
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Lj0g3v0161989.1
n.a. Ocs element-binding factor [Medicago truncatula] gi|357476543|ref|XP_003608557.1| chr0 76261647 76262898 +
1 domain prediction
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Lj0g3v0201259.1
n.a. PREDICTED: transcription factor HBP-1b(c1)-like [Cicer arietinum] gi|502122910|ref|XP_004497935.1| chr0 99468895 99473241 +
1 domain prediction
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Lj0g3v0238289.1
n.a. G-box binding factor [Glycine max] gi|351727162|ref|NP_001237919.1| chr0 123573550 123576664 -
1 domain prediction
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Lj0g3v0239739.1
n.a. TGA-type basic leucine zipper protein TGA1.1 [Phaseolus vulgaris] gi|15148922|gb|AAK84888.1|AF402607_1 chr0 124450464 124452498 -
1 domain prediction
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Lj0g3v0246999.1
n.a. PREDICTED: ocs element-binding factor 1-like [Glycine max] gi|356499972|ref|XP_003518809.1| chr0 128009316 128010412 +
1 domain prediction
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Lj0g3v0275009.1
n.a. PREDICTED: G-box-binding factor 2-like [Cicer arietinum] gi|502125525|ref|XP_004498959.1| chr0 142661165 142662324 +
1 domain prediction
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Lj0g3v0279809.1
n.a. PREDICTED: ocs element-binding factor 1-like [Glycine max] gi|356499972|ref|XP_003518809.1| chr0 145187370 145188028 -
1 domain prediction
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Lj0g3v0280689.1
n.a. PREDICTED: G-box-binding factor 1-like [Cicer arietinum] gi|502123622|ref|XP_004498193.1| chr0 145545558 145549617 +
1 domain prediction
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Lj0g3v0280689.2
n.a. PREDICTED: G-box-binding factor 1-like [Cicer arietinum] gi|502123622|ref|XP_004498193.1| chr0 145545558 145549617 +
1 domain prediction
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Lj0g3v0282379.1
n.a. PREDICTED: basic leucine zipper 63-like [Cicer arietinum] gi|502148785|ref|XP_004507268.1| chr0 146384583 146385985 -
1 domain prediction
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Lj0g3v0284289.1
n.a. ABSCISIC ACID-INSENSITIVE 5-like protein [Medicago truncatula] gi|357489223|ref|XP_003614899.1| chr0 147511989 147512496 -
1 domain prediction
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Lj0g3v0289579.1
n.a. PREDICTED: basic leucine zipper 63-like [Cicer arietinum] gi|502160605|ref|XP_004511808.1| chr0 150386570 150387574 +
1 domain prediction
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Lj0g3v0314579.1
n.a. PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2-like isoform X1 [Cicer arietinum] gi|502098256|ref|XP_004491191.1| chr0 164210924 164215577 -
1 domain prediction
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Lj0g3v0317419.1
n.a. PREDICTED: light-inducible protein CPRF2-like isoform X2 [Cicer arietinum] gi|502117378|ref|XP_004495800.1| chr0 165818873 165819821 +
1 domain prediction
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Lj0g3v0329729.1
n.a. transcription factor bZIP76, partial [Glycine max] gi|145652345|gb|ABP88227.1| chr0 172368483 172369510 -
1 domain prediction
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Lj0g3v0336269.1
n.a. PREDICTED: transcription factor TGA7-like [Glycine max] gi|356552851|ref|XP_003544776.1| chr0 176119282 176123535 +
1 domain prediction
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Lj0g3v0336279.1
n.a. transcription factor bZIP83, partial [Glycine max] gi|145652349|gb|ABP88229.1| chr0 176119282 176124239 +
1 domain prediction
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Lj0g3v0347019.1
n.a. n.a. chr0 182050801 182052139 -
1 domain prediction
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Lj0g3v0350599.1
n.a. PREDICTED: bZIP transcription factor 60-like [Cicer arietinum] gi|502169952|ref|XP_004514723.1| chr0 184285731 184288033 +
1 domain prediction
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Lj1g3v0726910.1
n.a. PREDICTED: transcription factor TGA3-like isoform X3 [Cicer arietinum] gi|502175012|ref|XP_004515653.1| chr1 9651805 9655880 +
1 domain prediction
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Lj1g3v1650270.1
n.a. bZIP transcription factor [Caragana korshinskii] gi|110749701|gb|ABG90380.1| chr1 19818665 19822336 +
1 domain prediction
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Lj1g3v1756730.1
n.a. PREDICTED: G-box-binding factor 2-like [Cicer arietinum] gi|502125525|ref|XP_004498959.1| chr1 20506697 20507718 +
1 domain prediction
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Lj1g3v2035100.1
n.a. transcription factor bZIP [Lotus japonicus] gi|193237559|dbj|BAG50056.1| chr1 23804604 23808139 +
1 domain prediction
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Lj1g3v2035100.2
n.a. transcription factor bZIP [Lotus japonicus] gi|193237559|dbj|BAG50056.1| chr1 23804604 23808833 +
1 domain prediction
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Lj1g3v2216450.1
n.a. bZIP transcription factor bZIP46 [Glycine max] gi|351721722|ref|NP_001236963.1| chr1 26386442 26387822 -
1 domain prediction
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Lj1g3v2370100.1
n.a. PREDICTED: transcription factor HBP-1b(c1)-like [Glycine max] gi|356523320|ref|XP_003530288.1| chr1 27713922 27719606 -
1 domain prediction
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Lj1g3v2370100.2
n.a. PREDICTED: transcription factor HBP-1b(c1)-like [Glycine max] gi|356523320|ref|XP_003530288.1| chr1 27713922 27719606 -
1 domain prediction
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Lj1g3v3101560.1
n.a. bZIP transcription factor bZIP73A [Glycine max] gi|351724609|ref|NP_001235016.1| chr1 35153828 35155028 +
1 domain prediction
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Lj1g3v3381340.1
n.a. bZIP transcription factor bZIP124 [Glycine max] gi|351724635|ref|NP_001238344.1| chr1 38782423 38783169 -
1 domain prediction
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Lj1g3v4048460.1
n.a. ABSCISIC ACID-INSENSITIVE 5-like protein [Medicago truncatula] gi|357509087|ref|XP_003624832.1| chr1 47863949 47868361 -
1 domain prediction
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Lj1g3v4141650.1
n.a. PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-2.1-like [Cicer arietinum] gi|502108158|ref|XP_004493401.1| chr1 49185678 49192129 -
1 domain prediction
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Lj1g3v4315340.1
n.a. PREDICTED: transcription factor HBP-1b(c1)-like isoform X1 [Cicer arietinum] gi|502109068|ref|XP_004493558.1| chr1 50665704 50673249 -
1 domain prediction
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Lj1g3v4315340.2
n.a. PREDICTED: transcription factor HBP-1b(c1)-like isoform X1 [Cicer arietinum] gi|502109068|ref|XP_004493558.1| chr1 50665704 50673249 -
1 domain prediction
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Lj1g3v4315340.3
n.a. PREDICTED: transcription factor HBP-1b(c1)-like isoform X1 [Cicer arietinum] gi|502109068|ref|XP_004493558.1| chr1 50669162 50673249 -
1 domain prediction
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Lj1g3v4703010.1
n.a. BZIP transcription factor bZIP39 [Medicago truncatula] gi|357510985|ref|XP_003625781.1| chr1 56128731 56133100 +
1 domain prediction
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Lj1g3v4897980.1
n.a. bZIP transcription factor bZIP124 [Glycine max] gi|351724635|ref|NP_001238344.1| chr1 59364562 59365005 +
1 domain prediction
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Lj1g3v4979980.1
n.a. Opaque [Medicago truncatula] gi|357512331|ref|XP_003626454.1| chr1 60603966 60607415 +
1 domain prediction
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Lj2g3v0704980.1
n.a. bZIP transcription factor bZIP35 [Glycine max] gi|351721340|ref|NP_001236950.1| chr2 11337031 11337683 +
1 domain prediction
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Lj2g3v1199890.1
n.a. bZip transcription factor [Phaseolus vulgaris] gi|13430400|gb|AAK25822.1|AF350505_1 chr2 19136992 19137420 -
1 domain prediction
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Lj2g3v1510620.1
n.a. PREDICTED: transcription factor HBP-1a [Glycine max] gi|356531457|ref|XP_003534294.1| chr2 23911146 23918815 +
1 domain prediction
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Lj2g3v1670890.1
n.a. Basic leucine zipper transcription factor [Medicago truncatula] gi|357483891|ref|XP_003612232.1| chr2 25989823 25991046 +
1 domain prediction
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Lj2g3v1779810.1
n.a. G-box binding factor [Glycine max] gi|351727162|ref|NP_001237919.1| chr2 27179887 27182977 -
1 domain prediction
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Lj3g3v0797480.1
n.a. PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2-like [Glycine max] gi|356515347|ref|XP_003526362.1| chr3 9555314 9560548 +
1 domain prediction
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Lj3g3v1170190.1
n.a. Abscisic acid insensitive [Medicago truncatula] gi|357453061|ref|XP_003596807.1| chr3 15666648 15667837 -
1 domain prediction
 –