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Lj1g3v2293820.1

Overview

Field Value
Gene ID Lj1g3v2293820
Transcript ID Lj1g3v2293820.1
Lotus japonicus genome version MG20 v3.0
Description F3'H [Arachis hypogaea] gi|365919139|gb|AEX07282.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 17 17 – –
PANTHER
PTHR24298
12 508 497 0 –
PANTHER
PTHR24298:SF104
12 508 497 0 –
TMHMM
TMhelix
16 38 23 – –
Phobius
TRANSMEMBRANE
18 38 21 – –
Gene3D
G3DSA:1.10.630.10
34 504 471 6.40E-129
IPR001128
Phobius
CYTOPLASMIC_DOMAIN
39 517 479 – –
Pfam
PF00067
49 485 437 5.90E-94
IPR001128
SUPERFAMILY
SSF48264
49 504 456 9.04E-120
IPR001128
PRINTS
PR00463
76 95 20 2.30E-45
IPR002401
PRINTS
PR00463
179 197 19 2.30E-45
IPR002401
PRINTS
PR00463
293 310 18 2.30E-45
IPR002401
PRINTS
PR00385
304 321 18 2.00E-12
IPR001128
PRINTS
PR00463
313 339 27 2.30E-45
IPR002401
PRINTS
PR00463
356 374 19 2.30E-45
IPR002401
PRINTS
PR00385
357 368 12 2.00E-12
IPR001128
PRINTS
PR00463
397 421 25 2.30E-45
IPR002401
PRINTS
PR00463
437 447 11 2.30E-45
IPR002401
PRINTS
PR00385
438 447 10 2.00E-12
IPR001128
ProSitePatterns
PS00086
440 449 10 –
IPR017972
PRINTS
PR00463
447 470 24 2.30E-45
IPR002401
PRINTS
PR00385
447 458 12 2.00E-12
IPR001128

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005506
Molecular function Iron ion binding Interacting selectively and non-covalently with iron (Fe) ions.
Subterm of
GO:0016705
Molecular function Oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor.
Subterm of
GO:0020037
Molecular function Heme binding Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

Genome browser

LORE1 insertions 20

Expression data

Expression pattern

Expression pattern of Lj1g3v2293820.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v2293820.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.