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Lj1g3v2296400.1

Overview

Field	Value
Gene ID	Lj1g3v2296400
Transcript ID	Lj1g3v2296400.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: protein RDM1-like [Cicer arietinum] gi\|502123264\|ref\|XP_004498052.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	64	64	–	–
PANTHER	PTHR36366 View details on PTHR36366 Search for proteins/transripts with this domain View external data on PTHR36366	18	188	171	8.60E-43	–
PANTHER	PTHR36366:SF1 View details on PTHR36366:SF1 Search for proteins/transripts with this domain View external data on PTHR36366:SF1	18	188	171	8.60E-43	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	61	84	24	–	–
Pfam	PF09187 View details on PF09187 Search for proteins/transripts with this domain View external data on PF09187	74	188	115	2.80E-38	IPR015270 Show description in modal box View details on IPR015270 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF109920 View details on SSF109920 Search for proteins/transripts with this domain View external data on SSF109920	74	189	116	1.57E-27	IPR015270 Show description in modal box View details on IPR015270 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005634 View details of GO:0005634 AmiGO InterPro QuickGO	Cellular component	Nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.	Subterm of View details of GO:0043231
GO:0044030 View details of GO:0044030 AmiGO InterPro QuickGO	Biological process	Regulation of DNA methylation	Any process that modulates the frequency, rate or extent of the covalent transfer of a methyl group to either N-6 of adenine or C-5 or N-4 of cytosine.	Subterm of View details of GO:0051052 Regulates View details of GO:0006306

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj1g3v2296400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v2296400.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.