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Lj1g3v2404390.1

Overview

Field Value
Gene ID Lj1g3v2404390
Transcript ID Lj1g3v2404390.1
Lotus japonicus genome version MG20 v3.0
Description reduced leaflet 3 [Lotus japonicus] gi|225030814|gb|ACN79520.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR22891:SF9
69 873 805 0 –
PANTHER
PTHR22891
69 873 805 0 –
MobiDBLite
mobidb-lite
106 140 35 – –
Pfam
PF16486
166 312 147 7.70E-26
IPR032474
SMART
SM01163
321 373 53 3.40E-22
IPR014811
Pfam
PF08699
322 371 50 2.10E-17
IPR014811
SUPERFAMILY
SSF101690
368 526 159 1.15E-39
IPR003100
SMART
SM00949
381 512 132 1.30E-04
IPR003100
ProSiteProfiles
PS50821
381 490 110 21.849
IPR003100
Pfam
PF02170
384 506 123 6.60E-23
IPR003100
Gene3D
G3DSA:2.170.260.10
384 494 111 1.70E-28 –
CDD
cd02846
384 489 106 3.05E-27 –
Gene3D
G3DSA:3.40.50.2300
550 725 176 2.00E-12 –
SUPERFAMILY
SSF53098
654 873 220 3.79E-42
IPR012337
ProSiteProfiles
PS50822
669 883 215 26.929
IPR003165
SMART
SM00950
669 882 214 1.10E-16
IPR003165
Pfam
PF02171
670 873 204 1.20E-48
IPR003165
Gene3D
G3DSA:3.30.420.10
748 873 126 3.70E-07
IPR012337

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 10

Expression data

Expression pattern

Expression pattern of Lj1g3v2404390.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v2404390.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.