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| Field | Value |
|---|---|
| Gene ID | Lj1g3v2535020 |
| Transcript ID | Lj1g3v2535020.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | alphavirus core protein family [Arabidopsis lyrata subsp]. lyrata] gi|297829390|ref|XP_002882577.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 144 | 144 | – | – | |
| SignalP | 1 | 13 | 13 | – | – | |
| PANTHER | 41 | 315 | 275 | 1.50E-173 | – | |
| PANTHER | 41 | 315 | 275 | 1.50E-173 | – | |
| Pfam | 105 | 270 | 166 | 1.20E-61 | ||
| TMHMM | 143 | 165 | 23 | – | – | |
| Phobius | 145 | 165 | 21 | – | – | |
| Phobius | 166 | 205 | 40 | – | – | |
| Phobius | 206 | 229 | 24 | – | – | |
| TMHMM | 207 | 229 | 23 | – | – | |
| Phobius | 230 | 334 | 105 | – | – | |
| MobiDBLite | 313 | 334 | 22 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of Lj1g3v2535020.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v2535020.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.