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Lj1g3v2842390.2

Overview

Field Value
Gene ID Lj1g3v2842390
Transcript ID Lj1g3v2842390.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description Double-strand-break repair protein rad21-like protein [Medicago truncatula] gi|357507871|ref|XP_003624224.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Pfam
PF04825
1 101 101 3.70E-36
IPR006910
PANTHER
PTHR12585:SF29
2 258 257 5.80E-229 –
PANTHER
PTHR12585
2 258 257 5.80E-229 –
MobiDBLite
mobidb-lite
190 231 42 – –
MobiDBLite
mobidb-lite
355 381 27 – –
MobiDBLite
mobidb-lite
507 527 21 – –
MobiDBLite
mobidb-lite
539 595 57 – –
PANTHER
PTHR12585
558 920 363 5.80E-229 –
PANTHER
PTHR12585:SF29
558 920 363 5.80E-229 –
MobiDBLite
mobidb-lite
802 828 27 – –
PANTHER
PTHR12585:SF29
1117 1254 138 5.80E-229 –
PANTHER
PTHR12585
1117 1254 138 5.80E-229 –
SUPERFAMILY
SSF46785
1199 1254 56 1.25E-08
IPR011991
Gene3D
G3DSA:1.10.10.580
1199 1254 56 4.10E-14
IPR023093
Pfam
PF04824
1220 1254 35 2.80E-11
IPR006909

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 18

Expression data

Expression pattern

Expression pattern of Lj1g3v2842390.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v2842390.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.