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Lj1g3v2898460.3

Overview

Field Value
Gene ID Lj1g3v2898460
Transcript ID Lj1g3v2898460.3
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula] gi|357507981|ref|XP_003624279.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 51 51 – –
MobiDBLite
mobidb-lite
88 184 97 – –
PANTHER
PTHR24012
140 164 25 1.60E-65 –
PANTHER
PTHR24012:SF493
140 164 25 1.60E-65 –
Gene3D
G3DSA:3.30.70.330
191 275 85 4.10E-22
IPR012677
PANTHER
PTHR24012
195 313 119 1.60E-65 –
PANTHER
PTHR24012:SF493
195 313 119 1.60E-65 –
ProSiteProfiles
PS50102
198 276 79 16.944
IPR000504
SUPERFAMILY
SSF54928
198 328 131 2.09E-27
IPR012677
SMART
SM00360
199 272 74 2.30E-22
IPR000504
CDD
cd00590
200 271 72 2.05E-18 –
Pfam
PF00076
200 268 69 6.30E-20
IPR000504
Gene3D
G3DSA:3.30.70.330
276 328 53 8.30E-04
IPR012677
Coils
Coil
326 328 3 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

Genome browser

LORE1 insertions 10

Expression data

Expression pattern

Expression pattern of Lj1g3v2898460.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v2898460.3, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.